Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0292 ATGGCAGAAGATCATCCACAAGATGTAGCCGATAGGGAACGAATCTTCAAACATTTTGACGCCAATGGTGATGGCCAAATCTCTTCATCGGAGCTTGGCGATGCACTAAAAGCACTTGGATCAGTGACAGTAGAGGAAGTAAAGAACATGATGGATGAGATTGACACCGATGGAGATGGTTTCATTTCATATGAGGAGTTCACAGAATTTGCTAGAGCCAACTGTGGTTTAGTAAGGGATGTTGCCAAGATTTTTTAA 258 0.4225 MAEDHPQDVADRERIFKHFDANGDGQISSSELGDALKALGSVTVEEVKNMMDEIDTDGDGFISYEEFTEFARANCGLVRDVAKIF 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0292 85 Gene3D - 2 85 - -
Lal6g0292 85 SMART efh_1 46 74 IPR002048 GO:0005509
Lal6g0292 85 SMART efh_1 11 39 IPR002048 GO:0005509
Lal6g0292 85 PANTHER TROPONIN 1 85 - -
Lal6g0292 85 CDD EFh 13 72 IPR002048 GO:0005509
Lal6g0292 85 ProSiteProfiles EF-hand calcium-binding domain profile. 7 41 IPR002048 GO:0005509
Lal6g0292 85 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Lal6g0292 85 Pfam EF-hand domain pair 14 72 IPR002048 GO:0005509
Lal6g0292 85 SUPERFAMILY EF-hand 10 71 IPR011992 -
Lal6g0292 85 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Lal6g0292 85 PANTHER POLCALCIN NIC T 1 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0292 Lal-Chr6 1888264 1888521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0292 10 85 EF-hand Containing Proteins AT3G03430 72.368 1.08e-35 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0292 K13448 - sspl:121791282 146.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0277 22 1762281 1762619 Lal6g0292 6 1888264 1888521 LSH
Lal3g0532 3 3892401 3892655 Lal6g0292 6 1888264 1888521 PCT
Lal5g1188 5 14644705 14644959 Lal6g0292 6 1888264 1888521 PCT
Lal6g0292 6 1888264 1888521 Lal3g0532 3 3892401 3892655 PCT
Lal6g0292 6 1888264 1888521 Lal5g1188 5 14644705 14644959 PCT