Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0277 ATGCCTTTGCCCTCTGAACCTCAAACCCAAGTGCAACTCCAAAACCAGAAAAACTCATTGTCAGACACACGTATATATTCTGCAATGGCAGAAGATCCACAAGATATAGCTGATAGAGAGCGTATCTTCAAGCATTTCGATGCCAATGGTGATGGTCAAATCTCTTCATCAGAGCTTGGTGATGAACTAAATGCACTTGGATCAGTGACTGTGGAGGATGTGAAAAAAATGATGGATGAGATTGATACTGATGGGGATGGTTTCATTTCATATGAGGAGTTCACTGAATTTGCTAGAAACAACCGTGGTTTAATTAGGGATGCTGCCAAGATTTTTTAA 339 0.4041 MPLPSEPQTQVQLQNQKNSLSDTRIYSAMAEDPQDIADRERIFKHFDANGDGQISSSELGDELNALGSVTVEDVKKMMDEIDTDGDGFISYEEFTEFARNNRGLIRDAAKIF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0277 112 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Lal22g0277 112 ProSiteProfiles EF-hand calcium-binding domain profile. 34 68 IPR002048 GO:0005509
Lal22g0277 112 SUPERFAMILY EF-hand 35 97 IPR011992 -
Lal22g0277 112 SMART efh_1 38 66 IPR002048 GO:0005509
Lal22g0277 112 SMART efh_1 73 101 IPR002048 GO:0005509
Lal22g0277 112 PANTHER POLCALCIN NIC T 1 29 112 - -
Lal22g0277 112 Pfam EF-hand domain pair 41 99 IPR002048 GO:0005509
Lal22g0277 112 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Lal22g0277 112 Gene3D - 30 112 - -
Lal22g0277 112 PANTHER TROPONIN 29 112 - -
Lal22g0277 112 CDD EFh 40 99 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0277 Lal-Chr22 1762281 1762619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0277 32 112 EF-hand Containing Proteins AT3G03430 66.667 1.70e-35 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0277 K13448 - gmx:100806709 144.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0277 22 1762281 1762619 Lal6g0292 6 1888264 1888521 LSH
Lal3g0532 3 3892401 3892655 Lal22g0277 22 1762281 1762619 PCT
Lal5g1188 5 14644705 14644959 Lal22g0277 22 1762281 1762619 PCT
Lal22g0277 22 1762281 1762619 Lal3g0532 3 3892401 3892655 PCT
Lal22g0277 22 1762281 1762619 Lal5g1188 5 14644705 14644959 PCT