Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal5g1188 | ATGGCTGATGATCCACAACATGTAGCTGATAGGGACCACATTTTTAAGCATTTCGACGCCAATGGCGATGGCAAAATTTCTTCAACGGAGCTTGGTGATGCACTTAAAACACTTGGTTCTGTGACTAATGAGGAAGTGCAACGAATGATGGCCGAAATCGATACGGATGGCGATGAATTCATTTCATATGAGGAATTCTCAGAATTTGCACGAAATAATCGTGGCCTAGTGAAGGATGTTGCTAAAGTTTTTTAA | 255 | 0.4118 | MADDPQHVADRDHIFKHFDANGDGKISSTELGDALKTLGSVTNEEVQRMMAEIDTDGDEFISYEEFSEFARNNRGLVKDVAKVF | 84 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal5g1188 | 84 | CDD | EFh | 13 | 71 | IPR002048 | GO:0005509 | |
| Lal5g1188 | 84 | Gene3D | - | 2 | 84 | - | - | |
| Lal5g1188 | 84 | SUPERFAMILY | EF-hand | 11 | 69 | IPR011992 | - | |
| Lal5g1188 | 84 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 6 | 41 | IPR002048 | GO:0005509 | |
| Lal5g1188 | 84 | PANTHER | TROPONIN | 1 | 84 | - | - | |
| Lal5g1188 | 84 | ProSitePatterns | EF-hand calcium-binding domain. | 19 | 31 | IPR018247 | - | |
| Lal5g1188 | 84 | Pfam | EF-hand domain pair | 14 | 70 | IPR002048 | GO:0005509 | |
| Lal5g1188 | 84 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 44 | 76 | IPR002048 | GO:0005509 | |
| Lal5g1188 | 84 | SMART | efh_1 | 45 | 73 | IPR002048 | GO:0005509 | |
| Lal5g1188 | 84 | SMART | efh_1 | 10 | 38 | IPR002048 | GO:0005509 | |
| Lal5g1188 | 84 | PANTHER | POLCALCIN NIC T 1 | 1 | 84 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal5g1188 | Lal-Chr5 | 14644705 | 14644959 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal5g1188 | 4 | 84 | EF-hand Containing Proteins | AT3G03430 | 70.370 | 1.93e-37 | 119 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal5g1188 | K13448 | - | csv:101214153 | 140.584 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal3g0532 | 3 | 3892401 | 3892655 | Lal5g1188 | 5 | 14644705 | 14644959 | LSH | |
| Lal5g1188 | 5 | 14644705 | 14644959 | Lal22g0277 | 22 | 1762281 | 1762619 | PCT | |
| Lal5g1188 | 5 | 14644705 | 14644959 | Lal6g0292 | 6 | 1888264 | 1888521 | PCT | |
| Lal22g0277 | 22 | 1762281 | 1762619 | Lal5g1188 | 5 | 14644705 | 14644959 | PCT | |
| Lal6g0292 | 6 | 1888264 | 1888521 | Lal5g1188 | 5 | 14644705 | 14644959 | PCT |