Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0532 ATGGCTGATGATCCACAACATGTAGCTGACAGGGACCACATTTTCAAGCATTTCGACGCCAATGGCGATGGGAAAATCTCTTCAGCAGAGCTTGGTGATGCACTTAAAACACTTGGATCAGTGACAAATGATGAAGTGCAACGAATGATGGCCGAAATCGATACAGATGGAGATGGCTTCATTTCATATGAGGAGTTCTCTGAATTTGCACAAAACAACCGTGGCCTAGTGAAGGACGTTGCTAAAGTTTTTTAA 255 0.4314 MADDPQHVADRDHIFKHFDANGDGKISSAELGDALKTLGSVTNDEVQRMMAEIDTDGDGFISYEEFSEFAQNNRGLVKDVAKVF 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0532 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Lal3g0532 84 CDD EFh 13 71 IPR002048 GO:0005509
Lal3g0532 84 Gene3D - 2 84 - -
Lal3g0532 84 ProSiteProfiles EF-hand calcium-binding domain profile. 44 76 IPR002048 GO:0005509
Lal3g0532 84 SUPERFAMILY EF-hand 11 69 IPR011992 -
Lal3g0532 84 SMART efh_1 10 38 IPR002048 GO:0005509
Lal3g0532 84 SMART efh_1 45 73 IPR002048 GO:0005509
Lal3g0532 84 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Lal3g0532 84 Pfam EF-hand domain pair 14 71 IPR002048 GO:0005509
Lal3g0532 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Lal3g0532 84 PANTHER POLCALCIN NIC T 1 1 84 - -
Lal3g0532 84 PANTHER TROPONIN 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0532 Lal-Chr3 3892401 3892655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0532 4 84 EF-hand Containing Proteins AT3G03430 71.605 1.17e-38 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0532 K13448 - csv:101214153 145.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0532 3 3892401 3892655 Lal5g1188 5 14644705 14644959 LSH
Lal3g0532 3 3892401 3892655 Lal22g0277 22 1762281 1762619 PCT
Lal3g0532 3 3892401 3892655 Lal6g0292 6 1888264 1888521 PCT
Lal22g0277 22 1762281 1762619 Lal3g0532 3 3892401 3892655 PCT
Lal6g0292 6 1888264 1888521 Lal3g0532 3 3892401 3892655 PCT