Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1228 ATGGACCCTAAAGACTTATTCTCCGCCAATTTTCTTGATGGTGGTGTAGCCACATGCATTGAGGGACAACACACCCCTTCAGTTATTGTAATTGGTGCTGGAATATCAGGGGTTGCTGCTGCACGTAGTCTCTACGATGCATCTTTTAAGGTGACTGTACTGGAGTCACGAGATAGACTTGGTGGCCGCATTCATACTGACTACTCACTTGGATGCCCAGTTGACATGGGAGCCTCATGGTTACATGGAGTTTGCAATGAGAATCCCTTGGCTCCATTGATACGTCGTCTAGGGCTTACATTGTATCGTACCAGTGGAGACAATTCTGTCTTATATGACCATGATTTGGAAAGTTATATGCTTTTTAACATCGATGGTCATCAAGTTCCACAACAGATGGTTGTAGAAATTGGAGAAACTTTTAAGAGAATCCTAGAAGAGACAGGGAAAGTGAGGGATGAGCACCCTGATGACATGTCAGTCTCCCAAGCGATTTCAATTGTGTTAGATAGGCATCCAGAACTAAGGCAAAAAGGACTTGCCCACGAAGTGCTTCAATGGTATATATGCAGAATGGAAGCTTGGTTTGCTGCTGATGCAGATATGATATCACTGCAAACATGGGATCAGGCAAGATACAATCCTGTTATAAATGCTCTTGCAAAAGATATTGATGTACGCTTGAACCACAGGGTGACCAAGATATCCAATGGTTACAACAAGGTTATGGTTACAGTTGAGGGTGGCAGGAACTTCGTTGCTGATGCTGCTATCATAACAGTTCCTCTTGGAATCTTAAAAGCTAATTTGATTGAATTTGAACCAAAACTTCCCGATTGGAAGGTTTCTGCAATTGCAGATCTTGGTGTGGGCAATGAAAATAAGATTGCCCTTAGATTTGACAAAGTATTTTGGCCTAATGTAGAACTCCTAGGTGTTGTTGCTCCGTCCTCTTACGCCTGTGGCTATTTTCTCAATCTCCATAAAGCGACAGGCAATCCAGTTCTTGTCTATATGGCTGCTGGCAGGTTTGCTTATGATCTTGAGAAGCTATCTGATGAGTCAGCTGCAAATTTTGTCATGCTACAGCTCATGAAGATGTTTCCTGATGCTTCCAAGCCGGTTCAATATCTTGTGTCACGTTGGGGAACAGATCAAAACTCTCTTGGTTGTTACTCGTGTGATTTAGTTGGAAAGCCAACTGATGTGTACGACAAGCTTCGCGCACCTTTAGGTAATCTGTTTTTTGGTGGAGAAGCTGTAAGCATGGACAACCAGGGGTCTGTGCATGGAGCTTACTCTGCTGGGGTCATGGCTGCTGAAAATTGTCAGAGATATCTTTTGGAGAATCAAGGTCAGGTGGACATAGTTTCTGTTAGGCATGAAATTCTTGGAAGTACTATACCTCTTCAGATTTCAAGGATGTGA 1428 0.4307 MDPKDLFSANFLDGGVATCIEGQHTPSVIVIGAGISGVAAARSLYDASFKVTVLESRDRLGGRIHTDYSLGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSVLYDHDLESYMLFNIDGHQVPQQMVVEIGETFKRILEETGKVRDEHPDDMSVSQAISIVLDRHPELRQKGLAHEVLQWYICRMEAWFAADADMISLQTWDQARYNPVINALAKDIDVRLNHRVTKISNGYNKVMVTVEGGRNFVADAAIITVPLGILKANLIEFEPKLPDWKVSAIADLGVGNENKIALRFDKVFWPNVELLGVVAPSSYACGYFLNLHKATGNPVLVYMAAGRFAYDLEKLSDESAANFVMLQLMKMFPDASKPVQYLVSRWGTDQNSLGCYSCDLVGKPTDVYDKLRAPLGNLFFGGEAVSMDNQGSVHGAYSAGVMAAENCQRYLLENQGQVDIVSVRHEILGSTIPLQISRM 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1228 475 SUPERFAMILY FAD-linked reductases, C-terminal domain 289 394 - -
Lal5g1228 475 Gene3D - 107 400 - -
Lal5g1228 475 SUPERFAMILY FAD/NAD(P)-binding domain 25 447 IPR036188 -
Lal5g1228 475 Gene3D - 28 441 IPR036188 -
Lal5g1228 475 PRINTS Flavin-containing amine oxidase signature 27 46 IPR001613 GO:0016491
Lal5g1228 475 PRINTS Flavin-containing amine oxidase signature 374 393 IPR001613 GO:0016491
Lal5g1228 475 PRINTS Flavin-containing amine oxidase signature 425 442 IPR001613 GO:0016491
Lal5g1228 475 PANTHER FLAVIN MONOAMINE OXIDASE 8 475 - -
Lal5g1228 475 PANTHER POLYAMINE OXIDASE 4 ISOFORM X1-RELATED 8 475 - -
Lal5g1228 475 Pfam Flavin containing amine oxidoreductase 35 441 IPR002937 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1228 Lal-Chr5 15042872 15048415 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1228 K17839 - gmx:100782576 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1425 3 20161682 20172750 Lal5g1228 5 15042872 15048415 LSH
Lal5g1228 5 15042872 15048415 Lal13g0597 13 3890131 3897324 PCT
Lal5g1228 5 15042872 15048415 Lal18g1298 18 15520761 15527084 PCT
Lal13g0597 13 3890131 3897324 Lal5g1228 5 15042872 15048415 PCT
Lal18g1298 18 15520761 15527084 Lal5g1228 5 15042872 15048415 PCT