Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0597 ATGGGAACTGAAAACCCCGATCGTCCAACTTTACCTTTTAGACCATTCCAAATTAATCATCCCTCTGTGCCTCCTCTTCCTCCTACTACATTTAATGCCCCACCCACTCATGCACCTTTCCACCGTTTTCCAACGCCACCGCAATTTCCATCCACCGTTCAAACACATCCACCGCCACGTGTTCCGCCCTTCATGCAGCCATCATCAATTCAACAACCCCAGCCTCAGCCACATACACCTTTTGTTTTAATTCGTCCAAATGTTCCTCCTCCCGTGTTTCACCCATCTTTTGAACTGCAAGCTCCACCTGTACATTCCTCTCTAGGGGTTTATACACCTGTTCCAGCAACGTCTTCGCCTTTTTTATCTCGTCAAGGAGGTTATGTTCCGCCTCCACCCGTGGCAGCTCCGTCGGGCATCCAGGCACGAATACAGCAGCCCAGATATGGGCCGCCTACAGGTGCTGTTCAGGGCTTGATGGAAGACTTCAGTTCATTCTCAATTCAAACGCGCCCGGGTATCGTGGAGCCATCGGTTGATCCTAATGAATTGCCAAGGCCATTGGATGGTGATGTGGAGCCGGATTCATTGGCTGAGATGTTTCCCATGAATTGCAATCCTAGGTATCTGCGATTTACAACCAATGCAATACCGAGCTCCCAGTCCTTAGCTTCTAGGTGGCATCTTCCTCTTGGAGCAGTTGTATGCCCGCTTGCAGAATCTCCTCATGGGGATGATGTGACTATAGTTAATCTTTCTCCGGGTGGTGTAGTACGCTGTAGGAGATGTCGTACATATGTCAATCCATATATGACATTTACAGAAGGCGGAAGAAAGTATCGCTGCAACATCTGTGCCTTGCTTAATGAAGTTCCTAGTGAATATTATGCACAATTAGATGCCACTGGCAAAAGGGTTGATTTGAATCAACGACCTGAGCTTACAAAGGGTACCATGGAGTTTGTTGCGTCAGCTGAATATATGGCGCGGCCTCCTATGCCTCCAGTATATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGTGGAATGATTGAGGTTGTGGCTCAAACAATCAGGTCATGCTTAGACGAGCTGCCTGGTTTTCCACGAACACAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAATTTGAAGTCATCCTTGACTCAGCCTCAGATGTTGGTAGTCTCAGATCTGGATGACATATTTGTTCCACTGCCAGATGATCTCCTTGTCAACTTATCAGAATCAAGAAATGTGGTGGAAATCTTTCTAGATAGTCTACCATCCATGTTCCAAGACAACGTGAATCTCGAATCTGCTTTTGGTCCTGCACTTAAGGCTGCATTTATGATTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTCCCATCTCTCGGCGTTGGTCGCTTGAAATTACGTGAAGATGATTCTCGCGTTTATGGCACCGATAAAGAACATATGTTAAGATTGGCAGAAGATCCATTTTACAAGCAAATGGCTGCTGAGTTTTCGAAATACCAGATCTCAGTCGATGTGTATGCATTCAGTGATAAGTACACTGACATAGCCACCTTAGGAACTCTGGCAAAGTATACTGCTGGTCAAGTGTATTTCTATCCAGCTTTCCAATCAGTCATTCATGGGGAGAAACTGAGAAGTGAATTAAGGAGAGACCTTACCAGAGAAACTGCCTGGGAAGCTGTAATGCGAATTAGATGTGCAAAAGGTGTCCGTTTCACAACTTATCATGGAAACTTTATGCTAAGATCCACTGATTTGTTAGCACTTCCAGCTGTAGATTGTGATAAAGCCTTTGCCATGCAGTTATCTCTTGATGAAGCATTGTTGACAACTCAGACAATGTATTTCCAAGTCGCATTGCTAATGGTTATATCCTCACAACAGAATAGATATACTGCATCGTGCGGAGAAAGGCGTATCAGAGTACACTCAGCAGCAGTTCCAGTAGTAACAGACTTGGGAGAGATGTATCGCCTGGCTGATACTGGTGCAATTGCATCTTTGTTTAGCAGGATAGCAATTGAGAAAATGTTGTCCCATAAACTGGAAGAAGCACGAGGTGCTGTGCAACTAAGAATCGTGAAAGCCCTCAGAGAATATAGAAATTTGCACGCAGTGCAACATCGCTTGGCAAACAGAATGATATATCCTGATTCATTGAAGTTCCTACCATTGTATGGATTAGCTCTCTGTAGATCAAAAGCTCTCCGTGGAGGGCATGGAGATGTTCCACTGGATGAACGATGTGCAGTTGGACATACAATGATGACTCTACCAATAAAAAGGCTGTTGAAACTTCTATATCCTAGTTTAATTCGACTTGATGAACATCTTCTGAAGGCTGATAACTTGAAAAGCATTGATATAAGGTTACCTTTGAGTAAGGAGAGCTTGGATTGTAGGGGCCTTTATCTGTATGATGATGGCTTCGGGTTCACTATATGGTTTGGTAGAGTGATTCCACCTGATATAGCTAAAAACTTACTTGGACCAGACTTCGCAGCAGAGTTATCTAAGGTTTGTCTTAAGGAGCAAAATAACGAAATGTCAAAGGAACTGATGAAGGTACTTGTGAAATTCAGAAATACTGACCAAGCATATTACCAGCTGTCTCACCTTGTGAGACAAGGTGAACAACCCAGAGAAGGATTCCTTCTTGCAAACCTTGTTGAGGATCAGATGCGTGGTAATAGTGGATATGCTGATTGGATGGTAAAGATTTACCGACAAGTGCAGCAATCATAA 2796 0.436 MGTENPDRPTLPFRPFQINHPSVPPLPPTTFNAPPTHAPFHRFPTPPQFPSTVQTHPPPRVPPFMQPSSIQQPQPQPHTPFVLIRPNVPPPVFHPSFELQAPPVHSSLGVYTPVPATSSPFLSRQGGYVPPPPVAAPSGIQARIQQPRYGPPTGAVQGLMEDFSSFSIQTRPGIVEPSVDPNELPRPLDGDVEPDSLAEMFPMNCNPRYLRFTTNAIPSSQSLASRWHLPLGAVVCPLAESPHGDDVTIVNLSPGGVVRCRRCRTYVNPYMTFTEGGRKYRCNICALLNEVPSEYYAQLDATGKRVDLNQRPELTKGTMEFVASAEYMARPPMPPVYFFLIDVSISAVRSGMIEVVAQTIRSCLDELPGFPRTQIGFATFDSTIHFYNLKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRNVVEIFLDSLPSMFQDNVNLESAFGPALKAAFMIMSQLGGKLLIFQNTLPSLGVGRLKLREDDSRVYGTDKEHMLRLAEDPFYKQMAAEFSKYQISVDVYAFSDKYTDIATLGTLAKYTAGQVYFYPAFQSVIHGEKLRSELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLDEALLTTQTMYFQVALLMVISSQQNRYTASCGERRIRVHSAAVPVVTDLGEMYRLADTGAIASLFSRIAIEKMLSHKLEEARGAVQLRIVKALREYRNLHAVQHRLANRMIYPDSLKFLPLYGLALCRSKALRGGHGDVPLDERCAVGHTMMTLPIKRLLKLLYPSLIRLDEHLLKADNLKSIDIRLPLSKESLDCRGLYLYDDGFGFTIWFGRVIPPDIAKNLLGPDFAAELSKVCLKEQNNEMSKELMKVLVKFRNTDQAYYQLSHLVRQGEQPREGFLLANLVEDQMRGNSGYADWMVKIYRQVQQS 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0597 931 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 796 930 IPR036180 -
Lal13g0597 931 Gene3D von Willebrand factor, type A domain 334 571 IPR036465 -
Lal13g0597 931 Gene3D - 204 316 - -
Lal13g0597 931 Gene3D Sec23/Sec24 helical domain 667 928 - -
Lal13g0597 931 PANTHER SEC24-RELATED PROTEIN 16 930 - -
Lal13g0597 931 SUPERFAMILY Zn-finger domain of Sec23/24 252 331 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal13g0597 931 PANTHER OS04G0129500 PROTEIN 16 930 - -
Lal13g0597 931 MobiDBLite consensus disorder prediction 18 41 - -
Lal13g0597 931 Pfam Sec23/Sec24 zinc finger 258 295 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal13g0597 931 Gene3D Severin 786 909 IPR029006 -
Lal13g0597 931 Pfam Sec23/Sec24 trunk domain 332 568 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lal13g0597 931 Pfam Sec23/Sec24 beta-sandwich domain 574 667 IPR012990 -
Lal13g0597 931 SUPERFAMILY Helical domain of Sec23/24 678 785 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lal13g0597 931 CDD Sec24-like 332 573 IPR041742 GO:0006886|GO:0006888|GO:0030127
Lal13g0597 931 MobiDBLite consensus disorder prediction 1 41 - -
Lal13g0597 931 Pfam Sec23/Sec24 helical domain 678 781 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lal13g0597 931 SUPERFAMILY beta-sandwich domain of Sec23/24 94 676 - -
Lal13g0597 931 SUPERFAMILY vWA-like 332 571 IPR036465 -
Lal13g0597 931 Gene3D - 205 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0597 Lal-Chr13 3890131 3897324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0597 K14007 - gmx:100791083 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1425 3 20161682 20172750 Lal13g0597 13 3890131 3897324 PCT
Lal5g1228 5 15042872 15048415 Lal13g0597 13 3890131 3897324 PCT
Lal13g0597 13 3890131 3897324 Lal3g1425 3 20161682 20172750 PCT
Lal13g0597 13 3890131 3897324 Lal5g1228 5 15042872 15048415 PCT