Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1425 ATGGGGACTGAAAATCCTGGTCGTCCGGGCTTCCCTGCAAGACCTGCTTCCTCACCTTTTGCTGCTGCACAGACACCTTTTTCATCAACCGGTCCGGCAGCTGGATCAGAGCCTACTTCTTTCCGACCTACTCCTCCTGCTCCTCCTCAGACGTCTACACCATTTTCATTATCAGGAGGACCTGTGGTGAGACCAGGGGTACCGAGTTTTAGGCCTGGACCACCTGGCAGGTTCAATGACCCATCGGCACCTCCTCCTCCTTTTCCCCCAACATCTAGTGTCCTCCCACCTGGTGGACCTTTCCAGCGTTATCCAGCACCACAGTTTTCCACAACATCACCACAAGCACCTGTGCCACATGCTCCGCCCACGATTGGGCAGCCATCATTTCAACATTCTACAATTCAAGCACCATCTTTTACAGCATCACTTCCTCCTCAGTCGCAGACACCTTTTGTTCCAATGGGGTCTCCCCCACCAAGTGCCACTCCCGCTCCTTTGGGTTCGAATGGTCCTCCTCCCGTGTATCAGCCATCATTTCCAGGATATTCCCGTCCTCAGGCTGGTCCAGAAATGCAAGCTCCTCCACCTATGCATTCCTCTCCCCCTGCTAATCAAGGAAATTATGGACTTGTTCTGCCTGCAGCATCTTCTCCTTTTCTACCTCATCAAAAACAAGGAGGCTATGTTCCATCGCCCTCAGTGGGTGCTCCACTAGGCATGCATCCAATGCAGCAGCCAGGATCTGGACCCCCTATTGGTGCCGTTCAGGGATTGGCTGAAGACTTCAGCTCACTCACAATACAAACTCGTCCTGGAACAATGGATCCATTATTTGATGCTAAAGAACTTCCAAGGCCATTGGATGGTGATGTGGAACCAAACAATTTAGCCGACGTATATACCGCAAACTGCCATCCTAGATTTCTTCGACTCACAACCAATGCTGTTCCTAGCTCCCAGTCCTTAGCTTCAAGGTGGCATCTGCCTCTTGGAGCGGTTGTATGTCCACTTGCAGAACCTCCTGAAGGGGAAGAGGTACCCATAGTTAGTTTTGCACCAGCTAGTGTTGTACGATGTAGAAGATGTCGTACATATGTGAATCCATTTATGACATTTACTGAAGGTGGAAGGAAGTACCGCTGCAACGTCTGCACCTTGCTTAATGATGTTCCTAGTGAATATTATGCCCAATTAGATGCCACTGGTAAAAGAGTTGATTTGAATCAACGACCTGAGCTGACAAAGGGAACTGTAGAATTTGTTGCTCCTGCTGAATATATGGTGCGGCCTCCTATGCCCCCAGTATATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCCCAAACAATAAAGTCATGCTTAGATGAGCTACCTGGCTTTCCACGAACACAAATAGGGTTCGCAACTTTTGATAGCACAATACATTTCTATAATATGAAGTCATCTTTGACACAGTCACAGATGTTAGTGGTCTCCGATTTGGATGACATATTTATTCCACTGCCAGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGAGAACTTCCTAGATAGTTTACCATCCATGTTTCAGGACAATGTTAATTTGGAATCAGCTTTTGGTCCCGCTCTTAAGGCTGCATTTATGGTTATGAGTCAACTCGGAGGGAAATTGTTGATTTTTCAAAACTCACTCCCATCTCTTGGTATTGGCCGCTTGAAATTACGTGGAGATGATTCTCGTGCTTATGGGACAGATAAAGAGCATGGGTTGAGATTGCCTGAGGATCCATTTTATAAGCACATGGCTGCTGAGTTTTCTAAATACCAAATCTCAGCAAATGTGTATGCATTCAGTGATAAGTACACCGACATAGCCTCTTTAGGAACTCTGGCAAAGTATACTGCCGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGCCATTCATGGGGAGAAATTGAGATATGAGTTAAGAAGAGATCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGCATTAGATGTGCAAAAGGTGTACGCTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACTGATTTGTTAGCACTTCCAGCTGTAGATTCTGATAAAGCATTTGCCATGCAGTTATCTCTTGAAGAGACATTATTGACCACTCAGACACAGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTTCCAGTAGTTACAGACTTGGGAGAGATGTATCGCCTTGCTGATACGGGTGCAATTGTATCTCTGTTTAGTAGGCTAGCAATTGAGAAAACATTGTCCCAAAAACTTGAGGATGCACGTAGTGCAGTGCAACTAAGAATTGTGAAAGCCCTCAAAGAATATCGAAATCTTTATGCTGTGCAACACCGCTTGGCCAACAGAATGATATATCCTGAGTCTTTAAAGTTCCTACCACTGTATGGATTGGCTCTTTGTAGATCAATGCCTCTCCGTGGAGGGTATGGAGATGTTTCATTGGATGAACGATGTGCAGCAGGACACACAATGATGACTGTACCAATAAAAACACTGTTGAAACTTCTCTATCCTAGCTTGATTCGAGTTGATGAACATCTCCTGAAGGCATCTGTACTGACTGATGAGTTGAAAAGTATTGAGAGAAGGATACCTTTGACTAGTGAGAGCTTGGATTCTAGGGGTCTTTATATATATGATGATGGCTTCCGGTTCATTATATGGTTTGGTAGGGTGATTTCACCTGATATAGCTAAGAATTTACTCGGGGCAGACTTTGCAGCAGAATTATCGAAGGCTACTCTCAATAAGCATGATAATGAAATGTCAAGGAGGTTGATGAGGGTACTCGAGAAATTAAGAAGTACTGATCGAGTATATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAGCCCAGAGAAGGGTTCCTTCTTCTTGCAAACCTTCTTGAGGATCAGATGGGTGGTAATAGTGGGTATGCTGATTGGATGCTACAGATATCGCGAAAAGTGCAGCAATCCTAA 3084 0.4494 MGTENPGRPGFPARPASSPFAAAQTPFSSTGPAAGSEPTSFRPTPPAPPQTSTPFSLSGGPVVRPGVPSFRPGPPGRFNDPSAPPPPFPPTSSVLPPGGPFQRYPAPQFSTTSPQAPVPHAPPTIGQPSFQHSTIQAPSFTASLPPQSQTPFVPMGSPPPSATPAPLGSNGPPPVYQPSFPGYSRPQAGPEMQAPPPMHSSPPANQGNYGLVLPAASSPFLPHQKQGGYVPSPSVGAPLGMHPMQQPGSGPPIGAVQGLAEDFSSLTIQTRPGTMDPLFDAKELPRPLDGDVEPNNLADVYTANCHPRFLRLTTNAVPSSQSLASRWHLPLGAVVCPLAEPPEGEEVPIVSFAPASVVRCRRCRTYVNPFMTFTEGGRKYRCNVCTLLNDVPSEYYAQLDATGKRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQSQMLVVSDLDDIFIPLPDDLLVNLSESRSVVENFLDSLPSMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNSLPSLGIGRLKLRGDDSRAYGTDKEHGLRLPEDPFYKHMAAEFSKYQISANVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRYELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDSDKAFAMQLSLEETLLTTQTQYFQVALLYTASCGERRIRVHTMAVPVVTDLGEMYRLADTGAIVSLFSRLAIEKTLSQKLEDARSAVQLRIVKALKEYRNLYAVQHRLANRMIYPESLKFLPLYGLALCRSMPLRGGYGDVSLDERCAAGHTMMTVPIKTLLKLLYPSLIRVDEHLLKASVLTDELKSIERRIPLTSESLDSRGLYIYDDGFRFIIWFGRVISPDIAKNLLGADFAAELSKATLNKHDNEMSRRLMRVLEKLRSTDRVYYQLCHLVRQGEQPREGFLLLANLLEDQMGGNSGYADWMLQISRKVQQS 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1425 1027 MobiDBLite consensus disorder prediction 1 200 - -
Lal3g1425 1027 PANTHER OS04G0129500 PROTEIN 29 1026 - -
Lal3g1425 1027 Pfam Gelsolin repeat 902 957 IPR007123 -
Lal3g1425 1027 Gene3D von Willebrand factor, type A domain 434 671 IPR036465 -
Lal3g1425 1027 Coils Coil 882 902 - -
Lal3g1425 1027 Gene3D Sec23/Sec24 helical domain 758 1024 - -
Lal3g1425 1027 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 886 1025 IPR036180 -
Lal3g1425 1027 Pfam Sec23/Sec24 trunk domain 432 668 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lal3g1425 1027 SUPERFAMILY Zn-finger domain of Sec23/24 349 431 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal3g1425 1027 Pfam Sec23/Sec24 zinc finger 358 395 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal3g1425 1027 SUPERFAMILY vWA-like 432 671 IPR036465 -
Lal3g1425 1027 SUPERFAMILY Helical domain of Sec23/24 769 876 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lal3g1425 1027 PANTHER SEC24-RELATED PROTEIN 29 1026 - -
Lal3g1425 1027 MobiDBLite consensus disorder prediction 67 103 - -
Lal3g1425 1027 MobiDBLite consensus disorder prediction 151 180 - -
Lal3g1425 1027 Gene3D Severin 877 1005 IPR029006 -
Lal3g1425 1027 Gene3D - 305 757 - -
Lal3g1425 1027 Gene3D - 303 416 - -
Lal3g1425 1027 MobiDBLite consensus disorder prediction 21 37 - -
Lal3g1425 1027 SUPERFAMILY beta-sandwich domain of Sec23/24 149 767 - -
Lal3g1425 1027 MobiDBLite consensus disorder prediction 126 150 - -
Lal3g1425 1027 CDD Sec24-like 432 673 IPR041742 GO:0006886|GO:0006888|GO:0030127
Lal3g1425 1027 Pfam Sec23/Sec24 beta-sandwich domain 674 758 IPR012990 -
Lal3g1425 1027 Pfam Sec23/Sec24 helical domain 769 872 IPR006900 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1425 Lal-Chr3 20161682 20172750 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1425 K14007 - gmx:100791083 1668.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1425 3 20161682 20172750 Lal5g1228 5 15042872 15048415 LSH
Lal3g1425 3 20161682 20172750 Lal13g0597 13 3890131 3897324 PCT
Lal13g0597 13 3890131 3897324 Lal3g1425 3 20161682 20172750 PCT