Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1583 ATGGAAAACTCAGATGAAGAAAACGAACTTCCAAACCCTAACAACAACGACACCGAAGAAGAAATCGACGACGAAGAATACGAAGATGAAGACGATGATGACGACGACGACGTCGTTTCACACTTCCCGAATCCTCAATCTCCACTATCACAGTTACGCGAGCAACGATTCAAGCTTGAAACGCTGTCGCGACGGTTATCATCGGAACTCGTTCCAATCCGAGTCCACGACATTTTAATAAACGGCAATACAAAGACCAAAGATTGGATCATCGAAGCCGAACTCAAAGGGATCGAGAACGCTACCACCGTTCAGGAGTTGCTTCGCGCTTCGGAAATTGCACTCGCTAGGTTACGGAACCTTGGAATTTTCGAATCCAGTAAGGTTCGGCTCGAGCCTGGACCGCCGGAATTGCCGAACACCACCAATGTCATCATCGATGTCGTGGAGGCTGTGAATAAAGTCTCTGGTGAATTCGGCGTTTTCACGAAACCTGCGACTAGTTCTTGGACTGCTGAAGGTACTCTTAAGTACAAAAACTTTTTTGGTTATGGTGATCTATGGGATGCTTCTGTAGCCTATGGTGGCAAACAAGCGACAGAGTTGAGTGTAGGGGTGTATGCCCCTCGACTTAAGGGATCTCTAACTCCTCTTGTGGCAAGAGTATCCATGCTTTCCCAAGACTGGCTAGAGTTTTCTTCGTTCAAAGAGCAATTGTTGGGCTTGTCTCTTGGCTTAATCTCAACAAAACACCATGACTTAGCATACACTCTTGGATGGCGTACCTTAACAGATCCATCACAAATGTCATCTAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTATTGTCCTCTTTGAAGTATACATACAAAGTTGACAGGAGAAACTCACCGATTAGGCCTACAAAAGGATACGCGTTTCTCTCTACCACTCACTTTGGTGGCCTTACACCGGATCAGCGGGGTTTGCGGTTTCTGCGTCAGGAGTTTGATGTTCGCTATGCTGTACCATTTGGGTTTTATAATACAGCACTGAACCTTGGGATTTCTGCTGGTGCTGTTTTTCCATGGGGGCATGGTTTTATGGATAGGCCATCTCCCCTTCCTGAAAGGTTTTATTTAGGTGGTGATTTCTCTCCAGTATGCACCCTAGGAGGGCCGGTGACATTGTGGGGATTTAAAACTAGGGGATTAGGTCCTACTGAACAACGAAGGCAAAGCAGAGATGGAATTACTGCCGAGTGTGATGATTCCTCTAGATGGGACTCCATCGGAGGAGATCTTGCTGTTACTGCTTTTGCAGACCTCTCTTTTGATCTTCCAATTCGGTGGTTGAGAGAACATGGAATCCATGGGCATGTTTTTGCTGGTGCTGGGAATACTGCTAAATTAACTCAGAATGAATATAAGCATTTCTCTCCTCGAAAGTTCTTAGATTCCTTTCGAACATCGGTGGGATGTGGATTTGTTATTCCTACTACACTTTTCCGCCTAGAGGGTAATTTCTACTACATACTCAGGCAGGATGAACACGACCGTGGGAAAACTGGATTCAGGTTCAGCTTCTCAGCTCCTTCATAG 1581 0.4592 MENSDEENELPNPNNNDTEEEIDDEEYEDEDDDDDDDVVSHFPNPQSPLSQLREQRFKLETLSRRLSSELVPIRVHDILINGNTKTKDWIIEAELKGIENATTVQELLRASEIALARLRNLGIFESSKVRLEPGPPELPNTTNVIIDVVEAVNKVSGEFGVFTKPATSSWTAEGTLKYKNFFGYGDLWDASVAYGGKQATELSVGVYAPRLKGSLTPLVARVSMLSQDWLEFSSFKEQLLGLSLGLISTKHHDLAYTLGWRTLTDPSQMSSRSIRRQLGHGLLSSLKYTYKVDRRNSPIRPTKGYAFLSTTHFGGLTPDQRGLRFLRQEFDVRYAVPFGFYNTALNLGISAGAVFPWGHGFMDRPSPLPERFYLGGDFSPVCTLGGPVTLWGFKTRGLGPTEQRRQSRDGITAECDDSSRWDSIGGDLAVTAFADLSFDLPIRWLREHGIHGHVFAGAGNTAKLTQNEYKHFSPRKFLDSFRTSVGCGFVIPTTLFRLEGNFYYILRQDEHDRGKTGFRFSFSAPS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1583 526 MobiDBLite consensus disorder prediction 1 38 - -
Lal4g1583 526 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 166 524 - -
Lal4g1583 526 Pfam Surface antigen variable number repeat 73 150 IPR010827 GO:0019867
Lal4g1583 526 Pfam Omp85 superfamily domain 180 523 IPR000184 GO:0019867
Lal4g1583 526 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 15 524 - -
Lal4g1583 526 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 15 524 IPR039910 -
Lal4g1583 526 MobiDBLite consensus disorder prediction 1 50 - -
Lal4g1583 526 ProSiteProfiles POTRA domain profile. 73 151 IPR034746 -
Lal4g1583 526 Gene3D membrane protein fhac 72 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1583 Lal-Chr4 20027340 20031991 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1583 K07277 - gmx:100785408 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1583 4 20027340 20031991 Lal4g1583 4 20027340 20031991 ECH
Lal4g1583 4 20027340 20031991 Lal21g1260 21 15793231 15798727 LSH
Lal4g1583 4 20027340 20031991 Lal17g1583 17 17256849 17261702 LSH
Lal4g1583 4 20027340 20031991 Lal18g1388 18 16166384 16174344 PCT
Lal18g1388 18 16166384 16174344 Lal4g1583 4 20027340 20031991 PCT