Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1260 ATGGAAAACTCAGATGAAGACAAAGAACTTCCATTCCCTCCAAACCCTATCAATGCCACTAACCACATCGAACAAGAACATCAAAACGACGACGATGATGATGAAAACGACGATGACGATGAAGAAAACGACGAAGACAACGACGTCGTTTCGCTCTACCAGAACCATCAAAAACCTCAATCCTCACTATCACAGTTACGCGAGCAGAGTTTGAAGCTCGAAACGCTTACTCAGCGATTGTCTTCAGAACTCGTTCCAATTCGAGTCCACGTCGTTTTGATAAACGGCAATACGAAAACCAAAGATTGGATCATCGAAGCTGAATTCAGTGAGATCCATAACGCTACCACTGTTCAGGACTTGCTTCGCGCTTTGGAAATCGCACTCTCGAGGCTCCAGAGCCTCGAGGTTTTTGAATCCAGTAAGATTCGACTTGAACCTGGTCCGCCGGATTTTCCGAACACCGTCGATGTCATTGTCGATGTCGTTGAGGCTGTCAACAAAGTCTCTGGTCAATTCGGTGTTTTTACTAAACCCGCGAGAATTGTGAAAAAATGTGACATGTACGGCCGTGAGACTAGTTCTTGGACTGGTGAAGGTACTGTTAAGTACAAAAACTTGTTAGGTTATGGTGATCTTTGGGATTCTTCTGTAGCCTATGGAGCCAACCAAGCAACAGAGTTGAGTGTAGGGGTGTATGCCCCTCGACTTAAGGGATCTTTAACTCCTCTTGTAGCAAGACTATCCATGCTTTCCCAAGACTGGCAAGAGTTTTCTTCATACAAAGAACAATTGTTGGGCATGTCTTTTGGCTTAATCTCAACAAAGCACCATGACTTGGCATACACTCTTGGATGGCGTACCTTAACAGATCCATCACAAATGTCATCCAGGTCTATAAGGAGGAAGCTTGGGCATGGGTTGCTGTCGTCTTTGAAGTATACATATAAAGTTGACAGGAGAAACTCACCAATTAGGCCTACAAAAGGATATGCTTTACTTTCAACCACTCACTTTGGCGGCCTTACACCAGATCATCGGTTTCTGCGTCAGGAGTTTGATGTTCGCTATGCTGTCCCGTTTGGGCTTTATAATACAGCACTGAACTTTGGGGTTTCTGCTGGTGCTGTTTTTCCATGGGGGCATGGTTTTATGGACAAGCCATCTCCCTTTTCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCTGGCTTGCACCCTAGGAGGTCCGATGACATTGTGGGGATTTAAAACTAGGGGGTCAGGTCCCACTGAACCACGAAGGAAAAGCAGAGATGGAATTTTTGATGGGTATGATGATTCCTCTAGATGGGACTCCATTGGAGGAGATCTTGCTGCTACTGCTTTTGCAGACCTCTCCTTTGATCTTCCAATTAGGTGGTTGAGAGAGCATGGAATCCATGGGCATGTTTTTGCTGCTTCTGGGAATACCACTAAATTAACTCAGCATGAATATAAGAACTTCTCTCCTCGGAAGTTCTTAGACTCCTGTCGAACATTGGTGGGATGTGGATTTGTTATTCCTACTAGATTTTTCTGCCTGGAGGGTAACTACTACTACATACTCAGGCAGGATGGACATGATCATGGGAAAACTGGATTTAGGTTCGGCTTCTCGGCTCCTTCATAG 1650 0.4485 MENSDEDKELPFPPNPINATNHIEQEHQNDDDDDENDDDDEENDEDNDVVSLYQNHQKPQSSLSQLREQSLKLETLTQRLSSELVPIRVHVVLINGNTKTKDWIIEAEFSEIHNATTVQDLLRALEIALSRLQSLEVFESSKIRLEPGPPDFPNTVDVIVDVVEAVNKVSGQFGVFTKPARIVKKCDMYGRETSSWTGEGTVKYKNLLGYGDLWDSSVAYGANQATELSVGVYAPRLKGSLTPLVARLSMLSQDWQEFSSYKEQLLGMSFGLISTKHHDLAYTLGWRTLTDPSQMSSRSIRRKLGHGLLSSLKYTYKVDRRNSPIRPTKGYALLSTTHFGGLTPDHRFLRQEFDVRYAVPFGLYNTALNFGVSAGAVFPWGHGFMDKPSPFSERFYLGGDFSLACTLGGPMTLWGFKTRGSGPTEPRRKSRDGIFDGYDDSSRWDSIGGDLAATAFADLSFDLPIRWLREHGIHGHVFAASGNTTKLTQHEYKNFSPRKFLDSCRTLVGCGFVIPTRFFCLEGNYYYILRQDGHDHGKTGFRFGFSAPS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1260 549 Pfam Omp85 superfamily domain 206 546 IPR000184 GO:0019867
Lal21g1260 549 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 189 547 - -
Lal21g1260 549 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN ISOFORM 1 15 546 - -
Lal21g1260 549 MobiDBLite consensus disorder prediction 1 47 - -
Lal21g1260 549 Gene3D membrane protein fhac 86 165 - -
Lal21g1260 549 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 15 546 IPR039910 -
Lal21g1260 549 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1260 Lal-Chr21 15793231 15798727 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1260 K07277 - gmx:100785408 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1583 4 20027340 20031991 Lal21g1260 21 15793231 15798727 LSH
Lal21g1260 21 15793231 15798727 Lal17g1583 17 17256849 17261702 LSH
Lal21g1260 21 15793231 15798727 Lal18g1388 18 16166384 16174344 PCT
Lal18g1388 18 16166384 16174344 Lal21g1260 21 15793231 15798727 PCT