Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1388 ATGGCAAACACAGGTGAAGAACAAGAAGGATCAACTCAATCCCCATTTCCTCCAAACCCTAACAATGACTCTCCACACTCCACCAAACACGAAGAATCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTATGAAGAAGATGATGATGAAGAAGATGAATTCCAACGCCTGAATCCTCCAATACCCCAATCCCGAGAGTCCAAGCTTCGCGAGCAAAGATTCAAGGTGGAAGCCTTGTCCCGGCGGTTATCATCGGAGCCGATTCCGATTCGAGTCCACGATGTCATCATCAATGGCAACACTAAAACCAAGGATTGGGTCATAGAGGCGGAGCTTAAGGTATTAGAGACCGCCACCACCATGCTGGAGCTTATGAAAGCTTCTGAAATCGCCATGGCCAGGCTTCAGAGTCTCGAGATTTTTGATTCTTGCAAGGTTAAGCTCGAGGCTGGACCACCGGAATTGCCTCACACCGCTAATGTTGTCGTTCATGTTGTGGAGATCGATAGCAAAGTTTCTGGTGAATGCGGCGCTTATATGAAACCATCGGTTAGTTCTTGGACTACTGAAGGTTCTCTCAAGTATAAGAACTTGTTAGGTTATGCTGATATATGGGATGCTTCTTTGGCGTATGGTGCCAACCAAGCAACAGAGATGAGCATAGGAGTGAATGCCCCTAGGACTAAAGGATTCTTAGCTCCTCTAGTGGCACGTATATTCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCTTACAAACAACAGTTACTGGGAGCATCTCTTGGCTTGATCTCGACAAAACACCATGATTTAGTATACACTCTTGGATGGCATATATTAACAGATCCATCACAAGTGTCATCCAGGTCTATAAGGAGGCAGCTTGGTCATGGTTTACTGTCATCTTTGAAGTATACATTTAAAATTGACAAGAGAAATTCATCTATCAGGCCAACAAAAGGATATGCTTTTCTTTCTACCACTCACTTCGGTGGCCTTGCACCGGATCATCAGAGCTTGCGGTTTCTGCGTCAGGAGTTTGATGTCCGCTTCGCTGTTCCCTTTGGATTTTACAATACAGCGCTGAACCTTGGCATATCTGCTGGTGCTGTTTTTCCATGGGGGCATGGGTTCTTGAATAAGCCATCACCCCTTCCAGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGTACTCTAGGAGGACCAGCAACATTATGGGGATTTAAAACTAGGGGATTGGGACATACTGAACCAAGAAGGCAAAGTAGAGATGGGGCTAATGATGAAAATGATGGTTCCTGTGGAAGGGACTTTATTGGTGGAGATCTTGCTGTTACGGCTTTTGCAGACCTTTCTTTTGATCTTCCAATTAAGTGGTTGAGAGAACATGGAATCCATGGGCATGTTTTTGCTGGTATTGGCAATACTGCTAAATTAACTGAGAATGAATACATATATTTCTCCCCTCGGAAGTTCATAGAATCCTTTCGAACATCAGTGGGATGTGGAATTGTTATTCCTACTAGACTTTTCCGCCTAGAGGGTAACTACTACTCCTTGCTCAGGAAGGATAAACATGATATTGGGAAGAGTGGATTTAGGTTCAGCTTCTCAGGTCCTTCGTAG 1632 0.4406 MANTGEEQEGSTQSPFPPNPNNDSPHSTKHEESEEEEEEEEEDYEEDDDEEDEFQRLNPPIPQSRESKLREQRFKVEALSRRLSSEPIPIRVHDVIINGNTKTKDWVIEAELKVLETATTMLELMKASEIAMARLQSLEIFDSCKVKLEAGPPELPHTANVVVHVVEIDSKVSGECGAYMKPSVSSWTTEGSLKYKNLLGYADIWDASLAYGANQATEMSIGVNAPRTKGFLAPLVARIFMLSQDWQEFSSYKQQLLGASLGLISTKHHDLVYTLGWHILTDPSQVSSRSIRRQLGHGLLSSLKYTFKIDKRNSSIRPTKGYAFLSTTHFGGLAPDHQSLRFLRQEFDVRFAVPFGFYNTALNLGISAGAVFPWGHGFLNKPSPLPERFYLGGDFSPVCTLGGPATLWGFKTRGLGHTEPRRQSRDGANDENDGSCGRDFIGGDLAVTAFADLSFDLPIKWLREHGIHGHVFAGIGNTAKLTENEYIYFSPRKFIESFRTSVGCGIVIPTRLFRLEGNYYSLLRKDKHDIGKSGFRFSFSGPS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1388 543 MobiDBLite consensus disorder prediction 414 435 - -
Lal18g1388 543 MobiDBLite consensus disorder prediction 415 433 - -
Lal18g1388 543 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 182 541 - -
Lal18g1388 543 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 19 541 - -
Lal18g1388 543 Gene3D membrane protein fhac 89 167 - -
Lal18g1388 543 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 19 541 IPR039910 -
Lal18g1388 543 MobiDBLite consensus disorder prediction 1 70 - -
Lal18g1388 543 Coils Coil 27 50 - -
Lal18g1388 543 MobiDBLite consensus disorder prediction 1 17 - -
Lal18g1388 543 MobiDBLite consensus disorder prediction 33 54 - -
Lal18g1388 543 Pfam Omp85 superfamily domain 197 540 IPR000184 GO:0019867
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1388 Lal-Chr18 16166384 16174344 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1388 K07277 - gmx:100802876 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1388 18 16166384 16174344 Lal18g1388 18 16166384 16174344 ECH
Lal4g1583 4 20027340 20031991 Lal18g1388 18 16166384 16174344 PCT
Lal21g1260 21 15793231 15798727 Lal18g1388 18 16166384 16174344 PCT
Lal17g1583 17 17256849 17261702 Lal18g1388 18 16166384 16174344 PCT
Lal18g1388 18 16166384 16174344 Lal4g1583 4 20027340 20031991 PCT
Lal18g1388 18 16166384 16174344 Lal21g1260 21 15793231 15798727 PCT
Lal18g1388 18 16166384 16174344 Lal17g1583 17 17256849 17261702 PCT