Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1583 ATGGAAAGCTCAGATGAACAAAACGAACTTCCATTTCCTCCAAACCCTAACAATGCAACCAACACCGACACCGAAGAAGAAGAAGAAGAAGACATAGACGATGACAACGAAGAAGAAGAAGAAGAAGACGTAGACGATGACGACGACGTCGTTTCACAATCTCCACTCTCTAAGTTACGCCAACAGCGTTTCAACCTCGAAACGCTGTCACGGCGATTATCATCAGAACTCGTTCCAATCCGAGTCCACGACGTTTTCGTAAACGGCAACACCAAAACCAAAGATTGGATCATCGAAGCTGAACTCAAAGGAATCAAAAACGTAACCACTGTTCAGGAATTGCTTCACGCTTCTGAAATCGCACTCGCCAGGCTTCAGAGCCTTGGAATTTTTGAATCCACTAAGGTTCGACTCGAGCCTGGCCCGCCGGAGTTGCCAAACACCACTAATGTCATTATCGATGTCGTTGAGGCTGCAAACAGTGTTTCTGGTGAATGCGGCGTTTTTACGAAACCCGGGACTAGTTCTTGGACTGCTGAAGGTACTCTTAAGTACAAAAACTTTTTAGGTTATGGTGATCTATGGGATGCTTCTGTAGCCTATGGTGCCAACCAAGCGACGGAGTTGAGTTTAGGGGTCTATGCCCCTCGACTTAAGGGATCTTTAACTCCTCTGGTGGCAAGACTATCCATGCTTTCCCAAGACTGGCAAGAGTTTTCTTCATACAAAGAACAATTGTTGGGATTGTCTCTCGGCTTAATCTCAACAAAGCACCACGACTTAGCTTACACTCTTGGATGGCGTACCTTAACAGATCCGTTGCAAATGTCATCTATGTCTATAAGGAGGCAGCTTGGGCATGGTTTGCTGTCGTCTTTGAAGTATACATATAAAGTTGACAGGAGAAACTCACCAATTAGACCTACAAAAGGATATGCTTTTCTTTCTACCACTCAATTTGGCGGCCTTACACCAGATCATCGGAGTGTGCGGTTCCTGCGTCAGGAGTTTGATATTCGCTATGCTGTCCCATTTGGGTTTTATAGTACAGCACTGAACCTTGGGATTTCTGCTGGTGCTGTTTTTCCTTGGGGACATGGTTTTATGGACAAAACATCTCCTCTTCCCGAAAGGTTTTATTTAGGTGGCGATTTCTCTCCAGTTTGCACTCTAGGAGGGCCGATGACATTGTGGGGATTTAAAAATAGGGGATTAGGTCCTACTGAACCACGAAGGCAAAGCAGAGATGAAACTTTAGATGAGCAAGATGATTCCTCTAGACGGGACTATGTTGGAGGAGATCTTGCTGTTACTGCTTTTGCAGACCTCTCTTTTGATCTTCCAATTAGGTGGTTGAGAGAACATGGAATCCATGGGCATGTTTTTGCTGGTGCTGGGAATACTGCTAAATTAACTCAGAATGAATACAAGCACTTCTCTCCTCGGAAGTTCTTAGATTCCTTTCGAACATCGGTGGGATGTGGATTTGTTATTCCTACTAGACTTCTCCGCCTTGAGGGTAACTTTTACTACATACTCAAGCAAGATGAACATGATCGTGGGAAAACTGGATTTAGGTTCAGCTTCTCAGCTCCTTCGTAG 1602 0.4476 MESSDEQNELPFPPNPNNATNTDTEEEEEEDIDDDNEEEEEEDVDDDDDVVSQSPLSKLRQQRFNLETLSRRLSSELVPIRVHDVFVNGNTKTKDWIIEAELKGIKNVTTVQELLHASEIALARLQSLGIFESTKVRLEPGPPELPNTTNVIIDVVEAANSVSGECGVFTKPGTSSWTAEGTLKYKNFLGYGDLWDASVAYGANQATELSLGVYAPRLKGSLTPLVARLSMLSQDWQEFSSYKEQLLGLSLGLISTKHHDLAYTLGWRTLTDPLQMSSMSIRRQLGHGLLSSLKYTYKVDRRNSPIRPTKGYAFLSTTQFGGLTPDHRSVRFLRQEFDIRYAVPFGFYSTALNLGISAGAVFPWGHGFMDKTSPLPERFYLGGDFSPVCTLGGPMTLWGFKNRGLGPTEPRRQSRDETLDEQDDSSRRDYVGGDLAVTAFADLSFDLPIRWLREHGIHGHVFAGAGNTAKLTQNEYKHFSPRKFLDSFRTSVGCGFVIPTRLLRLEGNFYYILKQDEHDRGKTGFRFSFSAPS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1583 533 MobiDBLite consensus disorder prediction 1 56 - -
Lal17g1583 533 MobiDBLite consensus disorder prediction 22 50 - -
Lal17g1583 533 MobiDBLite consensus disorder prediction 1 21 - -
Lal17g1583 533 Gene3D membrane protein fhac 79 158 - -
Lal17g1583 533 MobiDBLite consensus disorder prediction 401 427 - -
Lal17g1583 533 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 173 531 - -
Lal17g1583 533 Coils Coil 22 42 - -
Lal17g1583 533 Pfam Surface antigen variable number repeat 80 157 IPR010827 GO:0019867
Lal17g1583 533 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 14 531 - -
Lal17g1583 533 MobiDBLite consensus disorder prediction 408 427 - -
Lal17g1583 533 Pfam Omp85 superfamily domain 187 530 IPR000184 GO:0019867
Lal17g1583 533 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 14 531 IPR039910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1583 Lal-Chr17 17256849 17261702 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1583 K07277 - gmx:100785408 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1583 17 17256849 17261702 Lal17g1583 17 17256849 17261702 ECH
Lal4g1583 4 20027340 20031991 Lal17g1583 17 17256849 17261702 LSH
Lal21g1260 21 15793231 15798727 Lal17g1583 17 17256849 17261702 LSH
Lal17g1583 17 17256849 17261702 Lal18g1388 18 16166384 16174344 PCT
Lal18g1388 18 16166384 16174344 Lal17g1583 17 17256849 17261702 PCT