Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1545 ATGGCTAGGAATAATTCTATTATTTCAAAAGCATTGATTCTGCTATGCCTAACCAGCATAGTAGTGCTCACACAAGGACATGCACAACCATGGTTACCATCACAAACACCCAAAAAGCTAGCCCTAAAGCTTAGTCTTAACAACCAAACCCTTTCACTAGCCTCATCTGATTATGGATTCATGGTTCATGAAACACCATTAGCTGTTTTTGAACCATCATCAGTAAATGATATCATAGACTTAATAAAGTATTCAAATTCTCTTAAAATACCTTTCACCATAGCACAAAGAGGACAAGCTCATTCAACCCATGGACAAACCATGACACATGATGGTGTTGTGTTGAATATGACTCGGTTGGGTGATTATAGAAAAGGGTCTAGGATTATAGTGTATGATGAATATGTTGATGTGGGTGGTGAACAAATATGGATTGATGTGTTACATGAAACACTTAAACGTGGACTCACTCCACTTTCTTGGACTGATTACTTGTATTTATCAGTTGGTGGCACACTCTCTAATGCTGGAATCAATGGTAGAATGTTCCTGTTTGGACCACAGATCTCAAATGTCCTTGAATTAGATGTTGTAACTGGAAAAGGAGACCTAGTAAAATGTTCTCCAGTTAAGAACTCAGAACTATTTTATAGTGTTCTCGGAGGATTAGGCCAATTTGGAGTTATAACAAGAGCTAGAATTCCTCTTGCACCTGCACCTACCGGGGCAAATTGCATGCAGGTAAAAAGGCTTCGCCTTCTTTACAATGATTTCTCTACATTCACCAAAGATCAAGAACATTTAATCTCATTCCATGAAAGAAATGATACTCATGCAGCAGATTATGTGTCAGGTTATATTCTACTGAATCAAACTTCATTGGATCTATCCTTTTATCCAACAAATTATCAAGCAAAGATAAGTTCCTTAGTTACTAAATATGGCATCATCTATAGCCTAGAGCTAGTGAAATATTATGACAACAATTCTCAAACACACATCAAGGAGGAAGTTGCAAGTTTGCTCAAAGGGCTAAACTATATTCCTAGATTTGCATTTGAAAAGGATCACTCCTACGAGGAATTTCAGAATAGACTTCATATAAGTGAACTAGATCTTACATCAAAAGGACTTTGGAACGTTCCTCATCCTTGGCTGAACTTGTTCATTCCAAGATCTCGAATATCAGATTTTAAAGAGGGTGTGTTAAAGGGCATTTTCCTTAAACAAAATATTTTTGTTGGAACCCCTTCATTCTTCCCCACAAACAGAAATAAGTGGGATGATAGGATGTCTGCGGTTACACCAAATGAAGATGTTTTCTATGTCTTGGGTTTATATCGTTCAAGTGGGTTTGATAAGGAGGAGGTGAAGGCTTCTGAAACTCAAAACCAACAAATACTACAATTTTGTAAAGATTTTGGTATTGAGATCAAACAATATCTTGCATCATATAAAACAAAGGAAGAATGGGTGAAGCAATATGGTTCCAAATGGCAACTTATTGAAGATAGAAAAGCCAAATTTGATCCTAAAAGAATATTATCACCTGGCCAAAGGATTTTCAATTAA 1572 0.3645 MARNNSIISKALILLCLTSIVVLTQGHAQPWLPSQTPKKLALKLSLNNQTLSLASSDYGFMVHETPLAVFEPSSVNDIIDLIKYSNSLKIPFTIAQRGQAHSTHGQTMTHDGVVLNMTRLGDYRKGSRIIVYDEYVDVGGEQIWIDVLHETLKRGLTPLSWTDYLYLSVGGTLSNAGINGRMFLFGPQISNVLELDVVTGKGDLVKCSPVKNSELFYSVLGGLGQFGVITRARIPLAPAPTGANCMQVKRLRLLYNDFSTFTKDQEHLISFHERNDTHAADYVSGYILLNQTSLDLSFYPTNYQAKISSLVTKYGIIYSLELVKYYDNNSQTHIKEEVASLLKGLNYIPRFAFEKDHSYEEFQNRLHISELDLTSKGLWNVPHPWLNLFIPRSRISDFKEGVLKGIFLKQNIFVGTPSFFPTNRNKWDDRMSAVTPNEDVFYVLGLYRSSGFDKEEVKASETQNQQILQFCKDFGIEIKQYLASYKTKEEWVKQYGSKWQLIEDRKAKFDPKRILSPGQRIFN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1545 523 SUPERFAMILY FAD-binding/transporter-associated domain-like 47 238 IPR036318 GO:0050660
Lal4g1545 523 Gene3D - 117 241 IPR016169 -
Lal4g1545 523 Gene3D - 48 522 IPR016167 -
Lal4g1545 523 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 247 522 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lal4g1545 523 Pfam FAD binding domain 66 208 IPR006094 GO:0050660
Lal4g1545 523 SUPERFAMILY FAD-linked oxidases, C-terminal domain 248 523 IPR016164 GO:0003824|GO:0050660
Lal4g1545 523 ProSiteProfiles PCMH-type FAD-binding domain profile. 62 239 IPR016166 GO:0071949
Lal4g1545 523 PANTHER GULONOLACTONE OXIDASE 10 523 - -
Lal4g1545 523 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 10 523 - -
Lal4g1545 523 Gene3D - 242 481 IPR016170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1545 Lal-Chr4 19588734 19593706 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1545 K00279 - gmx:100808553 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1545 4 19588734 19593706 Lal4g1545 4 19588734 19593706 ECH
Lal17g1531 17 16717376 16724122 Lal4g1545 4 19588734 19593706 LSH
Lal21g1201 21 14854675 14860697 Lal4g1545 4 19588734 19593706 LSH
Lal14g1675 14 16957630 16961946 Lal4g1545 4 19588734 19593706 PCT
Lal4g1545 4 19588734 19593706 Lal14g1675 14 16957630 16961946 PCT