Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1201 ATGGTAAGCAATAATCATCCACACCCATGGTCACCACTCCATGCACCCAAACACCTAGCCAAAAAGCTTAGTCTTGACCCTAAAACCCTTTCACTAGCCTCATCTGACTTTGGCCACATAAATTATGAAACACCATTAGCAGTTTTTGAACCATCATCTGAAACTGATATCATAGACTTAATAAAGTACTCAAATTCACTTCCTAACCCTTTCACCATAGCACCAAGAGGACAAGGTCACTCAACACATGGACAAAGCTTGACACATGATGGTGTGGTGCTGAATATGAATCGGTTAAGTGATTCTAGAAATGGGTCTGAGATTGTAGTGTATGATGAATATGTTGATGTGAGTGCTGAACAACTTTGGATTGATGTGTTGGGTGCAACACTTAAACATGGGTTAACACCACTTTCTTGGACTGATTACATGTATTTATCAGTTGGTGGCACACTCTCTAATGCTGGAATCAATGGCACAACCTTCAGATTTGGTCCTCAAATCTCTAATGTTCTTCAATTGCATGTTGTTACAGGAAAAGGAGATCTAGTAAAATGTTCTCATGTGAACAATTCAGAGCTATTTTATGCTGTTCTTGGAGGATTAGGCCAATTTGGGGTTATAACAAGAGCAAGAATAGCTCTAGGACCTGCACCCACAAGGGTGAAATGGCTTCGTTTGCTTTACACTGATTTCTGTGAATTTAGTGAAGACCAAGAACATCTAATTTCATTCCATGAAAAGCATGATACTAATGGAGCAGATCATGTAGCAGGTTACATTCTAGCAAATTTGCCACCACCAAGGGATGTTTCTTTTTATTCAGAACATGATCTACCAAAAATAACATCCTTGGTCACTCAATATGGCCTTGTCTATAGCTTAGAGTTAGGCAAATTTTATGACATTGGTTCTGAATCACATGTTCAAGAGGAGCTTGCAAAGTTGATCAAGGGATTGAAGTTTATTCCTACATTTTTGTTTGAAAAAGATGTATCATATGAAGAGTTTCATAATAGACTTCAAGTAGATATAGAATTTCTTAAATCAAAAGGACTTTTTGATGTCCCTCATCCTTGGATGGACTTGTTTGTTCCAAGATCTCGAATCACTGATTTTAATGAAGGTGTGCTGAAGGATATTATTCTTAAGCAAAATATTCCAGTTGCAAGTATTATATTCTACCCCATGAACAAGAACAAGTGGGATGATAGGATGTCAGCAATTACACCAAATGAAGATGTTTTCTATGTTCTTGGTTTATTTCGTGGATGTTTTGTTAAAGGGGAGTTGGAAGCTTCTGAGGCTCAAAACTCGCAAATACTACAATTTTGTAAGGATGTTGGTATTGATGCTAAGGTTTATCTTCCTTCATTCAAAACACAGTTTGAATGGGTTGAACACTATGGCTCTAAATGGGAACTTATTAAAGAAAGAAAAGATGAATTTGATCCCAAAAGATTATTGTCACCAGGACTTAAGATTTTTAATTAA 1494 0.3688 MVSNNHPHPWSPLHAPKHLAKKLSLDPKTLSLASSDFGHINYETPLAVFEPSSETDIIDLIKYSNSLPNPFTIAPRGQGHSTHGQSLTHDGVVLNMNRLSDSRNGSEIVVYDEYVDVSAEQLWIDVLGATLKHGLTPLSWTDYMYLSVGGTLSNAGINGTTFRFGPQISNVLQLHVVTGKGDLVKCSHVNNSELFYAVLGGLGQFGVITRARIALGPAPTRVKWLRLLYTDFCEFSEDQEHLISFHEKHDTNGADHVAGYILANLPPPRDVSFYSEHDLPKITSLVTQYGLVYSLELGKFYDIGSESHVQEELAKLIKGLKFIPTFLFEKDVSYEEFHNRLQVDIEFLKSKGLFDVPHPWMDLFVPRSRITDFNEGVLKDIILKQNIPVASIIFYPMNKNKWDDRMSAITPNEDVFYVLGLFRGCFVKGELEASEAQNSQILQFCKDVGIDAKVYLPSFKTQFEWVEHYGSKWELIKERKDEFDPKRLLSPGLKIFN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1201 497 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 219 496 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lal21g1201 497 PANTHER GULONOLACTONE OXIDASE 10 497 - -
Lal21g1201 497 Gene3D - 96 220 IPR016169 -
Lal21g1201 497 Gene3D - 221 455 IPR016170 -
Lal21g1201 497 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 45 80 IPR006093 GO:0016491
Lal21g1201 497 Gene3D - 26 496 IPR016167 -
Lal21g1201 497 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 10 497 - -
Lal21g1201 497 SUPERFAMILY FAD-linked oxidases, C-terminal domain 219 496 IPR016164 GO:0003824|GO:0050660
Lal21g1201 497 SUPERFAMILY FAD-binding/transporter-associated domain-like 22 217 IPR036318 GO:0050660
Lal21g1201 497 Pfam FAD binding domain 45 187 IPR006094 GO:0050660
Lal21g1201 497 ProSiteProfiles PCMH-type FAD-binding domain profile. 41 218 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1201 Lal-Chr21 14854675 14860697 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1201 K00279 - gmx:100808553 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1531 17 16717376 16724122 Lal21g1201 21 14854675 14860697 LSH
Lal21g1201 21 14854675 14860697 Lal4g1545 4 19588734 19593706 LSH
Lal14g1675 14 16957630 16961946 Lal21g1201 21 14854675 14860697 PCT
Lal21g1201 21 14854675 14860697 Lal14g1675 14 16957630 16961946 PCT