Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1531 ATGGGAAGCAAGAAACATCCACACCCATGGTCACCACTCCAAGCACCCAAAGACCTTGCCCAAAAGCTTAGTCTTGACCCTGAAACCCTTTCACTAGCCTCATCAGATTTTGGCCTTATAGATCATAAAACACCATTAGCTGTTTTTGAACCATCACATGTAAGTGACATAGTAAACTTGGTAAAGTACTCAAATTCACTTCCAATCCCATTCACCATTGCACCAAAAGGCAAAGGCCACTCAACTCATGGACAAGCTATGACACAAGATGGTGTTGTTGTGAATATGACTAGGTTAAGTGATTTTAGAAATGGGTCTGGGATTATAGTTTATGATGAATATGTTGATGTTGGTGGTGAACAACTTTGGATTGATGTGTTGCATGAAACACTTAAACATGGACTCACACCTCTTTCTTGGACTGATTATATGTATTTGACTGTTGGTGGAACACTCTCTAATGCTGGAATCAATGGCACAGCTTTCAGATTTGGTCCTCAGATTTCTAATGTCCTTCAATTGGATCTTGTTACTGGAAAAGGAGACATAGTGACATGTTCTCATAATAACAACTCAGAGCTATTTTATGCTGTTCTTGGAGGATTAGGCCAGTTTGGAATTATAACAAGGGCAAGAATAGCTCTAGGACCTGCACCTACAAGGGCAACATTTATTGAAGACCAAGAACATTTAATCTCATTCCATGAAAGGAATGAGACTAAAGGAGCAGATCATATAGCAGGTTACATTCTAGTGAATCATCCAAGTCTAAGCCTTTCATTTTATCCACAAAATGATCATTCAAGGATAACTTCTTTGGTTACTGAATATGGCATCATCTACAGCTTAGAGCTAGTCAAATATTATGACAACAATTCTCAAGCACTTGTCAATGAGGAAGTTCAAAACTTGCTCAAAGTGTTGAAGTTTATACCTTCATTTTCATTTGAAAAAGATGTATCATATGAGGAGTTTCATAATAGACTTCATGCAAGTGAGTTAGATCTCAAGCCTAAAGGACTTTGGGATGTCCCTCATCCTTGGATGGATTTATTTGTTCCAAAATCTCGAATCTCAGATTTTAATGAAGGAGTGTTGAAGGGCATTATTCTTAAAGAAAATATTCTTGTTCGGACTCTTATATTTTATCCCATGAACCGAAACAAGTGGGATGATAGAATGTCAGCAATTATTCCAGATGAATATATTTTCTATGCTTTGGGTTTTTTTCGTGCAACTGGGTTTGATCAAGTGGAGGTTGAAACTTCTGAGGCTCAAAACCAACATATACTACAATTTTGTAAGGATAATGGTATTAAATCCAAGGTATATTTGGCCTCATACAAAACACAAGAAGAATGGGTTGAACACTATGGTTCAAAATGGAAAATAATTGAAAAAAGAAAAGCTGAATTTGACCCTAAAAGAATATTGTCTCCTGGGCAAAGGATTTTCAATTAA 1461 0.3676 MGSKKHPHPWSPLQAPKDLAQKLSLDPETLSLASSDFGLIDHKTPLAVFEPSHVSDIVNLVKYSNSLPIPFTIAPKGKGHSTHGQAMTQDGVVVNMTRLSDFRNGSGIIVYDEYVDVGGEQLWIDVLHETLKHGLTPLSWTDYMYLTVGGTLSNAGINGTAFRFGPQISNVLQLDLVTGKGDIVTCSHNNNSELFYAVLGGLGQFGIITRARIALGPAPTRATFIEDQEHLISFHERNETKGADHIAGYILVNHPSLSLSFYPQNDHSRITSLVTEYGIIYSLELVKYYDNNSQALVNEEVQNLLKVLKFIPSFSFEKDVSYEEFHNRLHASELDLKPKGLWDVPHPWMDLFVPKSRISDFNEGVLKGIILKENILVRTLIFYPMNRNKWDDRMSAIIPDEYIFYALGFFRATGFDQVEVETSEAQNQHILQFCKDNGIKSKVYLASYKTQEEWVEHYGSKWKIIEKRKAEFDPKRILSPGQRIFN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1531 486 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 222 485 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lal17g1531 486 Gene3D - 221 444 IPR016170 -
Lal17g1531 486 Gene3D - 96 220 IPR016169 -
Lal17g1531 486 PANTHER GULONOLACTONE OXIDASE 9 486 - -
Lal17g1531 486 Pfam FAD binding domain 45 187 IPR006094 GO:0050660
Lal17g1531 486 SUPERFAMILY FAD-linked oxidases, C-terminal domain 219 486 IPR016164 GO:0003824|GO:0050660
Lal17g1531 486 SUPERFAMILY FAD-binding/transporter-associated domain-like 22 217 IPR036318 GO:0050660
Lal17g1531 486 ProSiteProfiles PCMH-type FAD-binding domain profile. 41 218 IPR016166 GO:0071949
Lal17g1531 486 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 9 486 - -
Lal17g1531 486 Gene3D - 26 485 IPR016167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1531 Lal-Chr17 16717376 16724122 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1531 K00279 - gmx:100816815 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1531 17 16717376 16724122 Lal17g1531 17 16717376 16724122 ECH
Lal17g1531 17 16717376 16724122 Lal21g1201 21 14854675 14860697 LSH
Lal17g1531 17 16717376 16724122 Lal4g1545 4 19588734 19593706 LSH
Lal14g1675 14 16957630 16961946 Lal17g1531 17 16717376 16724122 PCT
Lal17g1531 17 16717376 16724122 Lal14g1675 14 16957630 16961946 PCT