Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0688 ATGGCTAGGGTTTTGGCTCAGTCAGTTAATTTACCTGGCCTAGTGGCTGGGCAAAAGCATGGTCAACATAAGGGACAAGGAAAATTAAAAAGATCAGTGAAGATGGTTTGTGCCTTGCGTACGAACGGATTAAGAATGAATGGTTTCTCGGGACTACGCACTTTTAATCCTTTGGATACTATGATGAGACCGGGACTAGATTTTCATTCTAAAGTGTCAATTGCAACTTCTTCGCGGCGAGCAAGAGCTACCAGATCCATACCTAAAGCCATGTTTGAGCGTTTCACAGAGAAAGCAATAAAAGTTATTATGCTAGCCCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGAACAGAGCAAATTCTATTGGGCCTTATTGGTGAAGGCACTGGTATTGCTGCTAAGGTTCTAAAGTCTATGGGAGTCAACCTTAAAGATGCGCGCGTGGAAGTGGAGAAGATAATTGGAAGGGGTAGTGGATTTGTCGCTGTTGAGATTCCATTTACTCCCCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAAGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAACATTTGCTTCTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAGAACCTTGGTGCTGATCCAACTAATATTCGCACGCAGGTTATTCGCATGGTTGGTGAGAGTGCTGAAAGTGTTACTGCTACTGTTGGTCCAGGAAGTAGTGGCAATAAGATGCCAACTTTGGAGGAGTTTGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCCACAGATTGAACGTGTCACTCAAATTTTAGGACGTCGGACAAAAAACAATCCTTGTCTTATTGGGGAACCTGGTGTTGGGAAGACTGCAATTGCTGAAGGTCTTGCTCAGCTGATTGCAAATGGTGATGTACCTGAAACCATAGAGGGAAAAAAGGTCATAACCCTCGATATGGGGTTGCTTGTAGCTGGAACTAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAGGAAATCAAACAAAGTGATGAGATAATACTTTTCATCGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCTGCTAACATACTAAAACCGGCTCTTGCAAGAGGTGAACTGCAGTGTATTGGAGCCACAACACTGGACGAATACAGGAAGCACATTGAGAAAGATCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTAGATGAAACCATACAGATACTGAAAGGACTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGCTATACCGACGAGGCTCTTGTAGCTGCTGCACAGCTATCTTACCAGTATATCAGTGACCGATTCTTGCCTGACAAAGCTATAGATTTGGTTGATGAAGCTGGTTCACGAGTCCGGCTTCGACATGCACAGTTACCTGAAGAAGCGAGAGAACTTGACAAGGAGGTCAGGCAGATTATCAAGGAGAAAGAAGAAGCTTCTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAGAGAAATGGATTTGAAGGCTCAAATCTCAACACTTGTACAGAAAGGCAAGGAGATGAGCAAGGCAGAGACTGAGGCAGGAGATGCAGGTCCTATCGTGACTGAAGTTGACATACAACATATTGTATCCTCCTGGACTGGTATTCCTGTTGAGAAAGTCTCAACAGATGAATCTGATCGTCTCCTGAAGATGGAAGAGACTTTACACAAGCGAGTCATTGGTCAGGATGAAGCCGTAAAAGCGATTAGTCGGGCTATCCGCCGAGCCCGAGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTTGGGAAGTCCGAGTTGGCCAAAGCATTAGCTGCATATTACTTCGGTTCGGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACTGTCTCCAAACTCATTGGTTCACCTCCTGGATATGTTGGCTACACTGAAGGTGGTCAATTGACTGAAGCTGTTCGGCGCCGTCCTTACACTGTTGTACTTTTTGACGAGATTGAGAAAGCCCATCCTGATGTGTTCAACATGATGCTTCAAATCCTGGAAGATGGAAGACTAACAGACAGCAAGGGCAGAACTGTAGATTTCAAGAACACACTTCTAATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCCGAATTGGATTCGATTTGGATTATGATGAGAAGGATAGCAGTTATAACAGAATCAAGAGCTTGGTGACAGAGGAGCTAAAACAATACTTTAGGCCAGAGTTTTTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAACTCGAGGTGAAGGAGATAGCTGACATAATGCTCAACGAGGTGTTTGAGAGACTGAAGACTAAAGATATTGAACTTCAAGTGACAGAAAGGTTTAGGGACAGAGTGGTTGAGGAAGGTTATAATCCTAGCTATGGAGCTAGACCTCTAAGAAGAGCCATAATGAGACTTTTGGAGGACAGCATGGCCGAGAAGATGCTTGCTAGAGAGATCAAAGAGGGTGATTCTGTTATTGTGGATGTTGATTCTGATGGCAATGTCATTGTGCTTAACGGTAACAGTGGTGCCCCAGAGTCATTACCAGAGGTTCTTCCCATATAA 2769 0.4475 MARVLAQSVNLPGLVAGQKHGQHKGQGKLKRSVKMVCALRTNGLRMNGFSGLRTFNPLDTMMRPGLDFHSKVSIATSSRRARATRSIPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESAESVTATVGPGSSGNKMPTLEEFGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQLIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELDKEVRQIIKEKEEASRNQDFEKAGELRDREMDLKAQISTLVQKGKEMSKAETEAGDAGPIVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLNEVFERLKTKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGNSGAPESLPEVLPI 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0688 922 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Lal4g0688 922 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524
Lal4g0688 922 Pfam AAA lid domain 435 536 IPR041546 -
Lal4g0688 922 Pfam C-terminal, D2-small domain, of ClpB protein 815 895 IPR019489 -
Lal4g0688 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 902 IPR027417 -
Lal4g0688 922 Coils Coil 346 366 - -
Lal4g0688 922 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515
Lal4g0688 922 Coils Coil 505 525 - -
Lal4g0688 922 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Lal4g0688 922 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Lal4g0688 922 ProSitePatterns Chaperonins clpA/B signature 2. 669 687 IPR028299 -
Lal4g0688 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 535 IPR027417 -
Lal4g0688 922 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 75 921 - -
Lal4g0688 922 CDD AAA 275 427 - -
Lal4g0688 922 Gene3D - 437 581 - -
Lal4g0688 922 SMART ClpB_D2_small_2 815 905 IPR019489 -
Lal4g0688 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 639 657 IPR001270 GO:0005524
Lal4g0688 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 684 702 IPR001270 GO:0005524
Lal4g0688 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 713 731 IPR001270 GO:0005524
Lal4g0688 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 760 IPR001270 GO:0005524
Lal4g0688 922 SMART AAA_5 292 432 IPR003593 -
Lal4g0688 922 SMART AAA_5 635 816 IPR003593 -
Lal4g0688 922 Gene3D UVR domain 501 565 - -
Lal4g0688 922 PANTHER ATP-DEPENDENT CLP PROTEASE 75 921 - -
Lal4g0688 922 SUPERFAMILY Double Clp-N motif 93 234 IPR036628 -
Lal4g0688 922 CDD AAA 609 757 - -
Lal4g0688 922 Gene3D - 815 912 - -
Lal4g0688 922 Gene3D - 91 240 IPR036628 -
Lal4g0688 922 Gene3D - 587 813 IPR027417 -
Lal4g0688 922 Pfam AAA domain (Cdc48 subfamily) 634 808 IPR003959 GO:0005524|GO:0016887
Lal4g0688 922 Pfam ATPase family associated with various cellular activities (AAA) 297 413 IPR003959 GO:0005524|GO:0016887
Lal4g0688 922 Gene3D - 245 435 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0688 Lal-Chr4 5406886 5414257 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0688 K03696 - gmx:100804035 1681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0688 4 5406886 5414257 Lal21g0698 21 5558041 5565860 ECH
Lal4g0688 4 5406886 5414257 Lal4g0688 4 5406886 5414257 ECH
Lal21g0698 21 5558041 5565860 Lal4g0688 4 5406886 5414257 LSH
Lal14g1426 14 15500480 15508102 Lal4g0688 4 5406886 5414257 PCT
Lal7g0856 7 15125205 15131946 Lal4g0688 4 5406886 5414257 PCT
Lal19g1005 19 13920787 13927538 Lal4g0688 4 5406886 5414257 PCT
Lal4g0688 4 5406886 5414257 Lal14g1426 14 15500480 15508102 PCT
Lal4g0688 4 5406886 5414257 Lal7g0856 7 15125205 15131946 PCT
Lal4g0688 4 5406886 5414257 Lal19g1005 19 13920787 13927538 PCT