Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1426 ATGGCTAGGGTTCTGGCTCAGTCAATTAATATTCCGGGCATAGTGTCTGGGCAAAGGAATGGCCAACACAAGGGATCTGGAAAATCTAAAAGACCAGTAAAAATGATGTCTACCTTAAGAATGCCTGGAATAAGACTGACAACTTTCTCTGGACTACGTGCTTCTAACCCTTTGGATACTATGTTGAGACCTGGGCAAGATTTTCATTCTAAGGTGTTAACTGCAACTTCTTCTAGGCGAGCAAGGGCTAGCAGATGCGTACCTAAAGCCATGTTTGAGCGTTTCACTGAGAAAGCAATCAAGGTAATCATGCTTGCCCAGGAGGAAGCAAGACGGCTTGGTCATAATTTTGTTGGAACTGAACAAATTCTACTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCTAAGGTGTTGAAGTCTATGGGAATTAACCTTAAGGATGCACGTGTAGAAGTTGAAAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACCCCTCGCGCAAAGCGTGTTTTGGAGCTCTCACTGGAGGAAGCTCGCCAACTTGGCCACAATTATATTGGATCTGAACACTTGCTCCTAGGTCTTCTACGAGAGGGTGAGGGAGTAGCAGCACGTGTTATTCGCATGGTTGGTGAAAGTGCTGACAGTGTTCCTGCTAGTGTTGGTGGTCAAGGAAGTGGTAGCAATAAAATGCCAACTCTGGAGGAATATGGGACCAATTTGACCAAGCTAGCTGAGGAGGGAAAACTGGATCCTGTTGTGGGAAGGCAGCCACAAATTGAACGTGTCACTCAAATTTTAGGTCGTCGTACCAAAAATAATCCTTGTCTTATTGGAGAACCAGGTGTTGGGAAGACAGCTATTGCTGAAGGTTTAGCCCAGCGGATTGCTAATGGCGATGTTCCTGAGACTATAGAGGGAAAAAAGGTTATAACCCTTGATATGGGTTTGCTTGTAGCTGGAACTAAATATCGTGGAGAATTTGAGGAAAGATTGAAGAAACTAATGGAGGAAATCAAGCAAAATGATGATATAATACTTTTTATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCCGAAGGGGCAATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGAGGTGAACTGCAGTGTATAGGAGCTACAACTCTGGATGAATACAGGAAACACATCGAAAAAGATCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTGCCAGAACCAACTGTGGATGAAAGCATACAGATATTGAGAGGACTTAGAGAACGCTATGAGCTTCACCATAAACTCCGCTATACTGATGAGGCTCTTGTTGCTGCTGCGCAGCTGTCATACCAATATATTAGTGATCGATTTTTGCCAGACAAAGCTATAGATTTGATTGATGAAGCCGGTTCCCGAGTCCGGCTTCAACATGCACAGTTACCTGAAGATGCGAGAGTGCTGGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAAGGAGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAACTCCGAGATAAAGAAATGGATCTTAAGGCACAGATCTCAGCACTGGTAGAGAAGGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGAAGGTCCAGTTGTGACTGAAGTTGACATACAAAATATTGTCGCCTCCTGGACTGGTATTCCCGTTGATAAAGTCTCAGCAGATGAATCTGTCCGCCTCCTCAAGATGGAAGAGACTTTACATAAGCGAGTCATTGGTCAGGATGAAGCAGTTAAAGCCATTAGCCGTGCTATTCGCCGAGCCCGAGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGTTTCATCTTTTCTGGACCTACTGGGGTGGGAAAGTCTGAGTTGGCCAAATCTTTGGCTTCATACTACTTTGGCTCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCATACAGTCTCCAAACTCATTGGTTCTCCTCCCGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAGGCAGTCCGTCGTCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAAAAAGCACACCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGCTAACAGACAGTAAGGGAAGAACTGTGGACTTCAAGAACACACTTCTTATTATGACGTCAAACGTTGGAAGTAGTGTTATCGAGAAGGGTGGTCGTAAAATAGGTTTTGACCTTGATTATGATGAGAAGGATAGCAGTTATAACCGAATCAAGAGTTTGGTGACTGAGGAGCTAAAGCAGTACTTCAGGCCAGAGTTTTTGAATAGATTGGATGAAATGATTGTTTTCAGGCAACTAACAAAATTGGAGGTGAAGGAGATAGCTGACATAATGCTGAAGGAGGTGTTTGAGAGACTGAAGACCAAAGAGATTGAGCTTTCAGTGACAGAGAGATTTAGGGAACGAGTGGTTGATGAAGGTTATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCCATAATGCGGCTATTGGAGGACAGCATGGCTGAGAAGATGCTTTCTAGAGAGATTAAAGAGGGCGACTCAGTTATAGTGGATGCTGATTCTGATGGTAATGTGATTGTGCTTAACGGGAGCAGCGGTGCACCAGATTCACTGCCAGAGGCTCTTCCTGTCTAA 2727 0.4459 MARVLAQSINIPGIVSGQRNGQHKGSGKSKRPVKMMSTLRMPGIRLTTFSGLRASNPLDTMLRPGQDFHSKVLTATSSRRARASRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGESADSVPASVGGQGSGSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQNDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDESIQILRGLRERYELHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEDARVLDKEVRQIVKEKGEAVRNQDFEKAGELRDKEMDLKAQISALVEKGKEMSKAESEAGDEGPVVTEVDIQNIVASWTGIPVDKVSADESVRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLSREIKEGDSVIVDADSDGNVIVLNGSSGAPDSLPEALPV 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1426 908 SMART AAA_5 278 418 IPR003593 -
Lal14g1426 908 SMART AAA_5 621 802 IPR003593 -
Lal14g1426 908 CDD AAA 595 743 - -
Lal14g1426 908 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 75 908 - -
Lal14g1426 908 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Lal14g1426 908 Pfam Clp amino terminal domain, pathogenicity island component 182 224 IPR004176 -
Lal14g1426 908 Pfam C-terminal, D2-small domain, of ClpB protein 801 881 IPR019489 -
Lal14g1426 908 Gene3D - 574 799 IPR027417 -
Lal14g1426 908 Gene3D UVR domain 487 551 - -
Lal14g1426 908 Gene3D - 231 421 IPR027417 -
Lal14g1426 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 625 643 IPR001270 GO:0005524
Lal14g1426 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 670 688 IPR001270 GO:0005524
Lal14g1426 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 699 717 IPR001270 GO:0005524
Lal14g1426 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 732 746 IPR001270 GO:0005524
Lal14g1426 908 Pfam AAA lid domain 422 523 IPR041546 -
Lal14g1426 908 Gene3D - 423 567 - -
Lal14g1426 908 SUPERFAMILY Double Clp-N motif 93 203 IPR036628 -
Lal14g1426 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 887 IPR027417 -
Lal14g1426 908 Gene3D - 91 230 IPR036628 -
Lal14g1426 908 CDD AAA 261 413 - -
Lal14g1426 908 Pfam ATPase family associated with various cellular activities (AAA) 283 399 IPR003959 GO:0005524|GO:0016887
Lal14g1426 908 ProSiteProfiles Clp repeat (R) domain profile. 92 235 IPR004176 -
Lal14g1426 908 ProSiteProfiles UVR domain profile. 495 530 IPR001943 GO:0005515
Lal14g1426 908 ProSitePatterns Chaperonins clpA/B signature 2. 655 673 IPR028299 -
Lal14g1426 908 ProSitePatterns Chaperonins clpA/B signature 1. 373 385 IPR018368 GO:0005524
Lal14g1426 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 514 IPR027417 -
Lal14g1426 908 PANTHER ATP-DEPENDENT CLP PROTEASE 75 908 - -
Lal14g1426 908 SMART ClpB_D2_small_2 801 891 IPR019489 -
Lal14g1426 908 Gene3D - 801 898 - -
Lal14g1426 908 Pfam AAA domain (Cdc48 subfamily) 620 794 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1426 Lal-Chr14 15500480 15508102 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1426 K03696 - gmx:100804035 1612.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1426 14 15500480 15508102 Lal14g1426 14 15500480 15508102 ECH
Lal14g1426 14 15500480 15508102 Lal7g0856 7 15125205 15131946 LSH
Lal14g1426 14 15500480 15508102 Lal19g1005 19 13920787 13927538 LSH
Lal14g1426 14 15500480 15508102 Lal21g0698 21 5558041 5565860 PCT
Lal14g1426 14 15500480 15508102 Lal4g0688 4 5406886 5414257 PCT
Lal21g0698 21 5558041 5565860 Lal14g1426 14 15500480 15508102 PCT
Lal4g0688 4 5406886 5414257 Lal14g1426 14 15500480 15508102 PCT