Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1005 ATGGCTAGGGTTTTGGCTCAGTCAATTAATATTCCGGGCCTAGTGCCTGGGCAAAGGAATGGTCAGCATAAGGGATCGGGAAAATCTAAAAGACCGGTTAAAATGATGTCTACCTTAACAATGGCTGGAATAAGACTGTCAACTTTCTCTGGACTTCGTGCTTCTAATCCTTTGGATACTATGTTGAAACCTGCTGGGAAAGATTTTCATTCTAAGGTGTTAACTGCAACTTCTTCGAGGCGAGCAAGGGCTAGCAGATGCGTACCTAAGGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTAATTATGCTAGCTCAGGAGGAAGCTAGACGTCTCGGTCACAATTTTGTTGGAACGGAGCAGATTCTGTTGGGTCTTATTGGTGAGGGCACTGGTATTGCCGCTAAGGTTTTGAAGTCTATGGGAATTAACCTCAAGGATGCACGTGTGGAAGTTGAAAAGATAATCGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACGCCTCGCGCAAAGCGTGTTTTGGAACTCTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACCTGCTTTTGGGTCTTCTACGTGAGGGTGAGGGGGTAGCAGCACGTGTTATTCGCATGGTTGGTGAGAGTGCTGACAGCGTTCCTGCTAATGTTGGTGGTTCAGGAGGTGGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAATTGGACCCTGTTGTGGGAAGGCAGCCACAAATTGAACGTGTTACACAAATTTTAGGTCGTCGTACCAAAAATAATCCTTGTCTTATTGGAGAACCAGGTGTTGGGAAAACAGCTATTGCTGAAGGTTTAGCCCAGAGGATTGCAACCGGAGATGTTCCTGAGACAATAGAGGGAAAGAAGGTTATAACCCTTGACATGGGTCTGCTTGTAGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAGAAATTAATGGAGGAAATCAAACAAAATGATGATATAATACTTTTTATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCTGCAAACATATTAAAACCAGCTCTTGCAAGAGGTGAATTGCAGTGTATAGGAGCTACAACACTGGATGAATATAGGAAGCACATTGAAAAAGATCCAGCATTGGAGAGACGATTCCAGCCAGTTAAAGTGCCAGAACCTACTGTGGATGAAAGCATACAAATATTGAGAGGACTGAGAGAGCGCTATGAGATTCACCACAAGCTCCGATATACTGATGATGCACTTGTTGCAGCTGCACAGCTGTCACACCAATATATCAGTGATCGATTTTTGCCAGACAAAGCTATAGATTTGATTGATGAAGCCGGTTCTCGAGTCCGTCTTCAACATGCACAGTTACCTGAAGAAGCGAGAGTGCTGGACAAGGAGGTCAGGCAGATTGTCAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAACTAAGAGATAAAGAAATGGATCTTAAGGCACAGATCTCAACACTTGTAGAGAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGAAGGTCCAGTTGTGACTGAAGTTGACATACAACATATTGTGGCCTCGTGGACTGGTATTCCTGTGGATAAAGTCTCAGCAGATGAATCTGTCCGCCTCCTGAAGATGGAAGAGACTTTACACAAGAGAATAATTGGCCAGGACGAAGCAGTAAAAGCCATCAGCCGGGCTATTCGTCGAGCTCGAGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGAAAGTCCGAGTTGGCCAAATCACTGGCTGCATACTACTTTGGCTCTGAAGACGCCATGATTCGACTTGACATGAGTGAATTTATGGAAAGGCATACAGTCTCCAAACTCATTGGTTCTCCTCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAGGCAGTTCGGCGTCGTCCCTACACTCTTGTACTCTTCGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGGTTAACGGACAGTAAGGGAAGAACTGTGGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGTAGTGTTATCGAGAAGGGAGGTCGCAAAATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTATAACCGAATCAAAAGTTTGGTGACTGAGGAGCTAAAGCAATACTTCAGACCAGAGTTTTTGAATAGATTGGATGAAATGATTGTTTTCAGGCAACTCACAAAGTTGGAGGTGAAAGAGATAGCTGATATAATGCTGAAGGAGGTATTTGAGAGACTGAAAACCAAAGAGATTGAGCTTTCAGTGACAGAGAGATTTAAGGAAAGAGTGGTAGATGAAGGTTACAATCCTAGTTACGGGGCTAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCTAGGGAGATTAAAGAGGGAGACTCAGTTATAGTTGATGCTGATTCTGATGGTAATGTGATTGTGCTCAACGGCAGCAGTGGTGCACCAGAGTCACTGCCAGAGGCTCTTTCAGTCTAA 2730 0.4454 MARVLAQSINIPGLVPGQRNGQHKGSGKSKRPVKMMSTLTMAGIRLSTFSGLRASNPLDTMLKPAGKDFHSKVLTATSSRRARASRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGESADSVPANVGGSGGGSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQNDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDESIQILRGLRERYEIHHKLRYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARVLDKEVRQIVKEKEEAVRNQDFEKAGELRDKEMDLKAQISTLVEKGKEMSKAESEAGDEGPVVTEVDIQHIVASWTGIPVDKVSADESVRLLKMEETLHKRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLAAYYFGSEDAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTLVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIELSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGAPESLPEALSV 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1005 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 888 IPR027417 -
Lal19g1005 909 ProSitePatterns Chaperonins clpA/B signature 1. 374 386 IPR018368 GO:0005524
Lal19g1005 909 Gene3D UVR domain 488 552 - -
Lal19g1005 909 Coils Coil 492 512 - -
Lal19g1005 909 Pfam AAA domain (Cdc48 subfamily) 621 795 IPR003959 GO:0005524|GO:0016887
Lal19g1005 909 ProSitePatterns Chaperonins clpA/B signature 2. 656 674 IPR028299 -
Lal19g1005 909 Gene3D - 233 422 IPR027417 -
Lal19g1005 909 Gene3D - 574 800 IPR027417 -
Lal19g1005 909 CDD AAA 262 414 - -
Lal19g1005 909 Pfam ATPase family associated with various cellular activities (AAA) 284 400 IPR003959 GO:0005524|GO:0016887
Lal19g1005 909 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 76 907 - -
Lal19g1005 909 SMART ClpB_D2_small_2 802 892 IPR019489 -
Lal19g1005 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 516 IPR027417 -
Lal19g1005 909 ProSiteProfiles UVR domain profile. 496 531 IPR001943 GO:0005515
Lal19g1005 909 ProSiteProfiles Clp repeat (R) domain profile. 93 235 IPR004176 -
Lal19g1005 909 MobiDBLite consensus disorder prediction 12 32 - -
Lal19g1005 909 Pfam AAA lid domain 423 524 IPR041546 -
Lal19g1005 909 Gene3D - 802 899 - -
Lal19g1005 909 PANTHER ATP-DEPENDENT CLP PROTEASE 76 907 - -
Lal19g1005 909 Gene3D - 92 231 IPR036628 -
Lal19g1005 909 Pfam Clp amino terminal domain, pathogenicity island component 183 225 IPR004176 -
Lal19g1005 909 Pfam Clp amino terminal domain, pathogenicity island component 107 159 IPR004176 -
Lal19g1005 909 Pfam C-terminal, D2-small domain, of ClpB protein 802 882 IPR019489 -
Lal19g1005 909 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 626 644 IPR001270 GO:0005524
Lal19g1005 909 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 671 689 IPR001270 GO:0005524
Lal19g1005 909 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 700 718 IPR001270 GO:0005524
Lal19g1005 909 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 733 747 IPR001270 GO:0005524
Lal19g1005 909 SMART AAA_5 622 803 IPR003593 -
Lal19g1005 909 SMART AAA_5 279 419 IPR003593 -
Lal19g1005 909 SUPERFAMILY Double Clp-N motif 94 204 IPR036628 -
Lal19g1005 909 CDD AAA 596 744 - -
Lal19g1005 909 Gene3D - 424 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1005 Lal-Chr19 13920787 13927538 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1005 K03696 - gmx:100804035 1605.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1005 19 13920787 13927538 Lal7g0856 7 15125205 15131946 ECH
Lal19g1005 19 13920787 13927538 Lal19g1005 19 13920787 13927538 ECH
Lal14g1426 14 15500480 15508102 Lal19g1005 19 13920787 13927538 LSH
Lal7g0856 7 15125205 15131946 Lal19g1005 19 13920787 13927538 LSH
Lal19g1005 19 13920787 13927538 Lal21g0698 21 5558041 5565860 PCT
Lal19g1005 19 13920787 13927538 Lal4g0688 4 5406886 5414257 PCT
Lal21g0698 21 5558041 5565860 Lal19g1005 19 13920787 13927538 PCT
Lal4g0688 4 5406886 5414257 Lal19g1005 19 13920787 13927538 PCT