Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0698 ATGGATGATTCAGTAAGTGAGGCCACCGATTCAGGAATCATGGCTAGGGTTTTGGCTCAGTCAGTTAATGTACCTGGCCTAGTGGCTGGGCAAAGGCACGGTCAACATAAGGGACAAGGAGAGTTAAAAAGATCAGTGAAGACGATGTGTGCTTCTCGAACAAACAGATTAAGAATGAATGGTTACTCAGGACTACGTACTTCTAATCCTTTGGATATTATGTTGAGACCCGGACTGGATTTTCATTCGAAGGTGTCAATTGCAACTTCATCACGGAGAGCAAGAGCTACCAGATCCATACCTAAAGCCATGTTTGAGCGTTTCACAGAGAAAGCTATCAAAGTTATTATGCTGGCCCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTGGGAACAGAGCAAATTCTGTTGGGTCTTATTGGTGAGGGCACTGGTATTGCCGCTAAGGTTCTAAAGTCTATGGGAATCAACCTTAAAGATGCACGTGTGGAAGTGGAGAAGATAATTGGAAGAGGTAGTGGATTTGTCGCTGTTGAGATTCCATTTACTCCCCGTGCAAAGCGCGTTTTGGAACTCTCACTAGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGCTCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTATTCGTATGGTCGGTGAGAGTGCTGACAGTGTTGCTGCTACTGTTGGCCCAGGAAGTAGTGGCAATAAGATGCCAACTTTGGAGGAATACGGCACCAATTTGACCAAGCTAGCACAGGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCCACAAATTGAACGTGTTACTCAAATTTTAGGCCGCCGCACAAAAAATAATCCTTGTCTTATTGGTGAACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGCGGATTGCTAATGGTGATGTACCTGAAACCATAGAAGGGAAAAAGGTCATAACTCTGGATATGGGGTTGCTTGTAGCTGGAACTAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAGGAAATCAAGCAAAGTGATGAGATAATACTTTTTATCGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGAGCAATTGATGCTGCTAACATACTAAAACCAGCTCTGGCTAGAGGTGAACTGCAGTGTATTGGAGCCACAACACTTGATGAATACAGGAAGCACATTGAGAAAGATCCAGCTTTGGAGAGACGATTCCAGCCGGTTAAAGTGCCAGAGCCAACTGTTGATGAAACCATACAAATACTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGCTATACTGATGAAGCTCTTGTAGCTGCTGCACAGCTATCTTACCAGTATATCAGTGATCGATTTTTACCCGACAAAGCTATAGATTTGGTTGACGAAGCTGGTTCACGAGTCCGGCTTCGACATGCACAGTTACCTGAAGAGGCGAGAGAACTCGACAAGGAGGCCAGGCAGATTATTAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGATTTCGAAAAGGCTGGAGAGCTACGAGACAAAGAAATGGATCTGAAGGCACAAATCTCAGCACTTGTAGAGAAAGGGAAGGAGATGAGCAAGGCAGAGACTGAGGCAGGAGATGCAGGTCCTATTGTGACTGAAGTTGACATACAACATATTGTGTCCTCCTGGACTGGTATTCCTGTTGACAAAGTCTCAACAGATGAATCTGATCGCCTCCTCAAGATGGAAGATACTTTACACAAGCGAATTGTTGGTCAGGATGAAGCAGTAAAAGCGATAAGTCGGGCTATCCGTAGAGCCCGGGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTTGGGAAGTCTGAGTTGGCCAAAGCGTTGGCTGCATACTACTTTGGCTCTGAAGAAGCCATGATTCGTCTTGACATGAGTGAATTTATGGAAAGGCACACCGTCTCCAAACTCATAGGTTCACCTCCTGGATATGTTGGTTACACTGAAGGTGGTCAATTGACTGAGGCAGTCCGGCGGCGTCCATACACTGTTGTACTATTTGATGAGATCGAGAAAGCCCATCCCGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACAGACAGTAAAGGCAGAACTGTGGATTTCAAGAATACGCTTCTCATAATGACATCAAATGTTGGAAGCAGCGTGATTGAGAAAGGAGGCCGCCGAATTGGATTCGATCTGGATTATGATGAGAAGGACAGCAGTTACAATAGAATAAAGAGCTTAGTAACAGAGGAGCTAAAACAATACTTCAGGCCAGAGTTTTTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAACTTGAGGTGAAGGAGATAGCCGACATAATGCTCAATGAGGTGTTTAATAGACTGAAGACAAAAGACATTGAACTTCAAGTGACAGAAAGGTTTAAGGACAGAGTGGTTGATGAAGGTTATAATCCTAGTTATGGAGCAAGGCCTCTAAGAAGAGCGATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATCAAAGAGGGTGATTCTGTTATTGTCGATGTCGACTCGGATGGAAATGTGATTGTGCTTAATGGTAGCAGTGGTACCCCAGAGTCATTACCAGAGGCCCTTCCTGTATAA 2763 0.4495 MDDSVSEATDSGIMARVLAQSVNVPGLVAGQRHGQHKGQGELKRSVKTMCASRTNRLRMNGYSGLRTSNPLDIMLRPGLDFHSKVSIATSSRRARATRSIPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGESADSVAATVGPGSSGNKMPTLEEYGTNLTKLAQEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELDKEARQIIKEKEEAVRNQDFEKAGELRDKEMDLKAQISALVEKGKEMSKAETEAGDAGPIVTEVDIQHIVSSWTGIPVDKVSTDESDRLLKMEDTLHKRIVGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLNEVFNRLKTKDIELQVTERFKDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGTPESLPEALPV 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0698 920 Gene3D - 104 243 IPR036628 -
Lal21g0698 920 CDD AAA 273 425 - -
Lal21g0698 920 Gene3D - 435 579 - -
Lal21g0698 920 ProSiteProfiles Clp repeat (R) domain profile. 105 248 IPR004176 -
Lal21g0698 920 Gene3D - 585 811 IPR027417 -
Lal21g0698 920 Gene3D UVR domain 499 563 - -
Lal21g0698 920 PANTHER ATP-DEPENDENT CLP PROTEASE 88 920 - -
Lal21g0698 920 Pfam Clp amino terminal domain, pathogenicity island component 195 239 IPR004176 -
Lal21g0698 920 Pfam Clp amino terminal domain, pathogenicity island component 119 171 IPR004176 -
Lal21g0698 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 582 900 IPR027417 -
Lal21g0698 920 SUPERFAMILY Double Clp-N motif 106 216 IPR036628 -
Lal21g0698 920 ProSitePatterns Chaperonins clpA/B signature 2. 667 685 IPR028299 -
Lal21g0698 920 ProSitePatterns Chaperonins clpA/B signature 1. 385 397 IPR018368 GO:0005524
Lal21g0698 920 SMART AAA_5 290 430 IPR003593 -
Lal21g0698 920 SMART AAA_5 633 814 IPR003593 -
Lal21g0698 920 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 637 655 IPR001270 GO:0005524
Lal21g0698 920 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 682 700 IPR001270 GO:0005524
Lal21g0698 920 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 711 729 IPR001270 GO:0005524
Lal21g0698 920 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 744 758 IPR001270 GO:0005524
Lal21g0698 920 Coils Coil 503 523 - -
Lal21g0698 920 CDD AAA 607 755 - -
Lal21g0698 920 Gene3D - 244 433 IPR027417 -
Lal21g0698 920 Pfam AAA lid domain 433 535 IPR041546 -
Lal21g0698 920 Pfam C-terminal, D2-small domain, of ClpB protein 813 893 IPR019489 -
Lal21g0698 920 Gene3D - 813 910 - -
Lal21g0698 920 Pfam ATPase family associated with various cellular activities (AAA) 295 411 IPR003959 GO:0005524|GO:0016887
Lal21g0698 920 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 88 920 - -
Lal21g0698 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 527 IPR027417 -
Lal21g0698 920 Pfam AAA domain (Cdc48 subfamily) 632 806 IPR003959 GO:0005524|GO:0016887
Lal21g0698 920 Coils Coil 344 364 - -
Lal21g0698 920 ProSiteProfiles UVR domain profile. 507 542 IPR001943 GO:0005515
Lal21g0698 920 SMART ClpB_D2_small_2 813 903 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0698 Lal-Chr21 5558041 5565860 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0698 K03696 - gmx:100804035 1634.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0688 4 5406886 5414257 Lal21g0698 21 5558041 5565860 ECH
Lal21g0698 21 5558041 5565860 Lal21g0698 21 5558041 5565860 ECH
Lal21g0698 21 5558041 5565860 Lal4g0688 4 5406886 5414257 LSH
Lal14g1426 14 15500480 15508102 Lal21g0698 21 5558041 5565860 PCT
Lal7g0856 7 15125205 15131946 Lal21g0698 21 5558041 5565860 PCT
Lal19g1005 19 13920787 13927538 Lal21g0698 21 5558041 5565860 PCT
Lal21g0698 21 5558041 5565860 Lal14g1426 14 15500480 15508102 PCT
Lal21g0698 21 5558041 5565860 Lal7g0856 7 15125205 15131946 PCT
Lal21g0698 21 5558041 5565860 Lal19g1005 19 13920787 13927538 PCT