Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0658 ATGGCAGAGGAAACTCCTAAAACAACACTACCAATAACGACTGATGCAGATGCAGATGCAGTTGCAGTAGTGGTGCATGTAGAGGATGAAGTTAAGGTAACTAATGTTTCACTTGATGACAAAAACAACAACACAGAATCTGAAAAAGTTGTTGAGTTTAGTTCTTTCAAGGAAGAAAGTACTAGAGTTTCTGACTTACCTGAATCTGAGAAGAAAGCACTTGAAGAGCTTAAACAGCTTATTCAAGAATCACTTACCAAGCATGAGTTTTTTTCACTTGCTATCAACCCACCCAGAGAAGAAAAAAAGCCAGAATTGTTAGTTGCTGATAAGAAGGAACATGTTTCAGAACAAGTTTTTGATTTGGAAACAAAAACAAAAGAAAAGGAACAAGTTTCAGAATCAGTGGTTGATGATGTTGCAACAAAAAAAGAAGAAGACCAACTTACTAAAACAGAAGAAGAAGCTGCACAAGAAGTGAAAGAAACAGAAGAGACTGAGAAAAATACTGTAACAGATGAAGAAGGAGAGAAGAAGGAAGATGAACCAGAAGTGAAAGAAACTAAGGTGGTTGTTGCTCCCTCTATAGATGAAGATGGGGCAAAAACAGTGGAAGCTATTGAAGAAACCATTGTAGCTGTTCATTCTATAACTACTTCCACTGTTCCAGAACCTTCAACCAAAGATGAAGAAGAAAGAAAGGAAGATATCAAAGCTTCAGCTTCAACTTCACCAACATTGGTAGAACCAGAAGAAGTTTCAATTTGGGGTGTACCACTCCTTTTAGATGAGAGAACCAATGTGATTCTCTTGAAGTTTCTTCGTGCAAGAGACTTCAAGGTAAAAGAAGCATTCACCATGATAAAGAACACAATCAAATGGAGAAAAGAGTTTGGAATTGATGAGTTGTTGGAACAAGAGAACTTGGTTGATGAAGATTTGAAGAAGGTGGTGTACATGCATGGTTTTGACAAGGAGGGTCACCCTGTGTGTTATAACATTTATGGTGAGTTTCAGAACAAGGAAGTGTATAAGAAAACTTTTTCTGATGAGGAAAAGAGAGAGAAGTTTCTAAGGTGGAGGATTCAGTTTCTTGAAAAGAGTATAAGGAAATTGGATTTCACACCTGGTAGTGTTAGTACTATTGTTCAGGTTAATGATCTTAAGAATTCTCCTGGACCTGGAAAATGGGAACTTAGACAAGCTACCAAACAAGCCCTTCAATTGCTTCAGGACAATTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGAATGATAAGCCCTTTTCTCACACAGAGAACTAAAAGCAAGTTTGTCTTTGCTGGGCCTCCCAAATCAGCTGAAACCCTTATAAGATACATAGCTCCAGAGCAACTTCAAGTGAAGTATGGTGGACTAAGCAAAGATGGAGAATTTGTAAGTAATGATGTTGTTACAGAAATTACAGTAAGGCCAGCTGCTAAACATACTGCTGAATTTCCAGTTACTGAGAATTGTCTACTTTCTTGGGAGCTGAGAGTAATAGGGTGGGATATAAGTTATGGTGCAGAATTTGTGCCATGCACAGAAGGAAGCTATACAGTAATCATTCAGAAGGCTAGAAAAGTTTCTTCATCAGAAGAACCAGTGGTTTATAATAGTTACAAAATTAGTGAACCTGGCAAAATTGTTCTCACCATTGATAACCAAAGTTCCAAGAAGAAGAAACTCTTATACCGCGTAAAGACCAAACCTTCTTCCTTTGACTGA 1782 0.3793 MAEETPKTTLPITTDADADAVAVVVHVEDEVKVTNVSLDDKNNNTESEKVVEFSSFKEESTRVSDLPESEKKALEELKQLIQESLTKHEFFSLAINPPREEKKPELLVADKKEHVSEQVFDLETKTKEKEQVSESVVDDVATKKEEDQLTKTEEEAAQEVKETEETEKNTVTDEEGEKKEDEPEVKETKVVVAPSIDEDGAKTVEAIEETIVAVHSITTSTVPEPSTKDEEERKEDIKASASTSPTLVEPEEVSIWGVPLLLDERTNVILLKFLRARDFKVKEAFTMIKNTIKWRKEFGIDELLEQENLVDEDLKKVVYMHGFDKEGHPVCYNIYGEFQNKEVYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFTPGSVSTIVQVNDLKNSPGPGKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPPKSAETLIRYIAPEQLQVKYGGLSKDGEFVSNDVVTEITVRPAAKHTAEFPVTENCLLSWELRVIGWDISYGAEFVPCTEGSYTVIIQKARKVSSSEEPVVYNSYKISEPGKIVLTIDNQSSKKKKLLYRVKTKPSSFD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0658 593 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 307 482 IPR001251 -
Lal4g0658 593 Pfam CRAL/TRIO, N-terminal domain 251 290 IPR011074 -
Lal4g0658 593 CDD SEC14 312 477 IPR001251 -
Lal4g0658 593 PRINTS Cellular retinaldehyde-binding protein signature 269 291 - -
Lal4g0658 593 PRINTS Cellular retinaldehyde-binding protein signature 434 453 - -
Lal4g0658 593 PANTHER PATELLIN-3 PROTEIN 6 158 - -
Lal4g0658 593 PANTHER PATELLIN-3 PROTEIN 149 592 - -
Lal4g0658 593 Coils Coil 142 169 - -
Lal4g0658 593 SUPERFAMILY CRAL/TRIO N-terminal domain 62 306 IPR036273 -
Lal4g0658 593 Gene3D GOLD domain 492 587 - -
Lal4g0658 593 ProSiteProfiles GOLD domain profile. 481 587 IPR009038 -
Lal4g0658 593 SMART CRAL_TRIO_N_2 266 291 IPR011074 -
Lal4g0658 593 SUPERFAMILY CRAL/TRIO domain 317 479 IPR036865 -
Lal4g0658 593 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 490 588 IPR036598 -
Lal4g0658 593 MobiDBLite consensus disorder prediction 122 190 - -
Lal4g0658 593 SMART sec14_4 312 479 IPR001251 -
Lal4g0658 593 Pfam CRAL/TRIO domain 316 476 IPR001251 -
Lal4g0658 593 MobiDBLite consensus disorder prediction 225 239 - -
Lal4g0658 593 MobiDBLite consensus disorder prediction 215 245 - -
Lal4g0658 593 PANTHER PATELLIN-1 6 158 IPR044834 GO:0008289
Lal4g0658 593 PANTHER PATELLIN-1 149 592 IPR044834 GO:0008289
Lal4g0658 593 Gene3D - 251 491 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0658 Lal-Chr4 4993492 4996897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0658 270 453 Acyl Lipid Metabolism Gene Families AT5G47730 28.497 7.43e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0658 - - jre:108983836 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0658 4 4993492 4996897 Lal4g0658 4 4993492 4996897 ECH
Lal17g0789 17 5779087 5783789 Lal4g0658 4 4993492 4996897 LSH
Lal14g1409 14 15368884 15372354 Lal4g0658 4 4993492 4996897 PCT
Lal19g0981 19 13727897 13731741 Lal4g0658 4 4993492 4996897 PCT
Lal4g0658 4 4993492 4996897 Lal14g1409 14 15368884 15372354 PCT
Lal4g0658 4 4993492 4996897 Lal19g0981 19 13727897 13731741 PCT