Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0789 ATGACAGAGGAAACTCCTAAAACGTCATTACAAACAACAACAACAACAACACATGAAGAAGAAGTTAAGGTAACTGATGTTACACTTTCTGAGAAAAACAACAACACAAAAGCTAAAGCTGAAGAAGTTACAGAAGCTGAAACTGAAGGTGAAGCTGAGAAGAAGAAGGATGGTGAAAAAGTAGCTGATGCTGATTCCTTCAAGGAAGAGAGTACAAGAGTTTCTGAACTATTTGAAGCTGAGAAGAAAGCACTAGAAGAGATTAAGCAGCTTATTCAAGAAGCACTTAACAAACATGAGTTTTCTTCACTTGTTGTTAACTTACCCAAAGAAGAAGAACAAAAGTCAGAAACTTTAGCTTCTGATGTCAACAAGGAACAAGTTTCAGAACCTGTTGCTGATGTTGAAACAAAATCAGAAGACAAAGGAGAAGAAAAAGAACCTGTTTCAGAATCAGTTGCTGATGATGTTGCAACAGACAAAGAAGAAGGAGAGAAGAAAGAAGAAGACCAACCTGCAAAAATAGAAGAAGAAGCTGCACTGAAAGTGAAAGAAACATATGAGCCAGAGAAACCTACAAAAACTGATGAAAAAGAAGAAGCACTAGAAGTGAAAGAAACTAAGGTGGAGGTTGCTCCTATAGATGAAGATGGAGCCAAAACTGTGGAGGCTATTGAAGAAACCATTGTAGCTGTGTCATCTTCAACTTCAACTCTTCAAGAACCTTCAACCAAAGAAGAAGAAAGTAGCAAGATTGAAACTTCAGCTTCACCACCATTGTTGCCACCAGAAGAGGTATCCATCTGGGGTATACCACTTCTTTCAGATGAGAGAAGTGATGTTATTCTCTTGAAGTTTCTTCGTGCGAGAGACTTCAAGGTCAAAGAAGCTTTCACCATGATCAAGAACACAATTAAGTGGAGAAATGAGTTTGGAATTGATGAGTTGTTGGAAGAAGAGAATTTGGTTGATGATGATTTGGATAAAGTGGTGTACATGCATGGTTTTGATAAGGAAGGTCACCCTGTGTGTTACAACATCTATGGTGAGTTCCAGAACAAAGAGGTGTATAAGAAAACTTTCTCTGATGAGGAGAAAAGAGAGAAATTTCTGAGGTGGAGGATTCAGTTTCTTGAAAGGAGTATAAGGAAATTGGATTTTACACCTGGTGGTATTTGTACTATTGTTCAGGTTAATGATCTCAAGAATTCTCCTGGACCTGGAAAATGGGAACTAAGACAAGCTACCAAACAGGCCCTTCAATTGCTTCAGGACAATTATCCTGAATTTGTAGCCAAACAGGTATTCATAAATGTGCCATGGTGGTACTTAGCAGTGAACAGAATGATAAGCCCTTTTCTTACACAGAGAACCAAAAGCAAATTTGTGTTTGCTGGGCCTTCCAAATCAGCTGAGACCCTTTTGGGATACATAGCTCCAGAGCAACTTCCGGTCAAATATGGTGGACTAAGCAAAGATGGGGAATTTGGAATTACTGATGCTGTTACAGAAATTACAGTTAGGCCAGCATCTAAACATAATGTGGAATTCCCAGTTACTGAGAACTATGAACTTTCTTGGGAGCTAAGAGTAATAGGGTGGGATATAAGCTATGGTGCAGAGTTTGTACCAAGCACAGAAGGAAGCTATACCATAATAATTCAGAAGGATAGAAAAATTGGTTCATCAGAAGAACCAGTGATTTCTAATAGTTACAAAGTTGGTGAACCTGGTAAAGTTGTTCTCACCATTGATAACCAAAGTTCTAAGAAGAAGAAACTCTTGTACCGTTTGAAGACAAAGCCTAATTCTTCCTCTGAATGA 1824 0.3849 MTEETPKTSLQTTTTTTHEEEVKVTDVTLSEKNNNTKAKAEEVTEAETEGEAEKKKDGEKVADADSFKEESTRVSELFEAEKKALEEIKQLIQEALNKHEFSSLVVNLPKEEEQKSETLASDVNKEQVSEPVADVETKSEDKGEEKEPVSESVADDVATDKEEGEKKEEDQPAKIEEEAALKVKETYEPEKPTKTDEKEEALEVKETKVEVAPIDEDGAKTVEAIEETIVAVSSSTSTLQEPSTKEEESSKIETSASPPLLPPEEVSIWGIPLLSDERSDVILLKFLRARDFKVKEAFTMIKNTIKWRNEFGIDELLEEENLVDDDLDKVVYMHGFDKEGHPVCYNIYGEFQNKEVYKKTFSDEEKREKFLRWRIQFLERSIRKLDFTPGGICTIVQVNDLKNSPGPGKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLGYIAPEQLPVKYGGLSKDGEFGITDAVTEITVRPASKHNVEFPVTENYELSWELRVIGWDISYGAEFVPSTEGSYTIIIQKDRKIGSSEEPVISNSYKVGEPGKVVLTIDNQSSKKKKLLYRLKTKPNSSSE 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0789 607 Coils Coil 29 49 - -
Lal17g0789 607 MobiDBLite consensus disorder prediction 233 259 - -
Lal17g0789 607 MobiDBLite consensus disorder prediction 129 202 - -
Lal17g0789 607 Gene3D GOLD domain 504 600 - -
Lal17g0789 607 PANTHER PATELLIN-1 181 605 IPR044834 GO:0008289
Lal17g0789 607 PANTHER PATELLIN-1 21 176 IPR044834 GO:0008289
Lal17g0789 607 MobiDBLite consensus disorder prediction 1 74 - -
Lal17g0789 607 Pfam CRAL/TRIO domain 330 489 IPR001251 -
Lal17g0789 607 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 501 599 IPR036598 -
Lal17g0789 607 Coils Coil 74 98 - -
Lal17g0789 607 MobiDBLite consensus disorder prediction 1 18 - -
Lal17g0789 607 CDD SEC14 326 490 IPR001251 -
Lal17g0789 607 PRINTS Cellular retinaldehyde-binding protein signature 282 304 - -
Lal17g0789 607 PRINTS Cellular retinaldehyde-binding protein signature 447 466 - -
Lal17g0789 607 SUPERFAMILY CRAL/TRIO domain 330 492 IPR036865 -
Lal17g0789 607 MobiDBLite consensus disorder prediction 35 74 - -
Lal17g0789 607 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 320 495 IPR001251 -
Lal17g0789 607 PANTHER PATELLIN-3 PROTEIN 21 176 - -
Lal17g0789 607 PANTHER PATELLIN-3 PROTEIN 181 605 - -
Lal17g0789 607 SMART sec14_4 324 492 IPR001251 -
Lal17g0789 607 MobiDBLite consensus disorder prediction 111 202 - -
Lal17g0789 607 Pfam CRAL/TRIO, N-terminal domain 264 303 IPR011074 -
Lal17g0789 607 Gene3D - 324 503 IPR036865 -
Lal17g0789 607 Gene3D - 241 310 - -
Lal17g0789 607 ProSiteProfiles GOLD domain profile. 499 600 IPR009038 -
Lal17g0789 607 SMART CRAL_TRIO_N_2 279 304 IPR011074 -
Lal17g0789 607 SUPERFAMILY CRAL/TRIO N-terminal domain 73 319 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0789 Lal-Chr17 5779087 5783789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0789 283 484 Acyl Lipid Metabolism Gene Families AT1G55840 29.717 8.30e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0789 - - jre:109012759 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0789 17 5779087 5783789 Lal17g0789 17 5779087 5783789 ECH
Lal17g0789 17 5779087 5783789 Lal4g0658 4 4993492 4996897 LSH
Lal14g1409 14 15368884 15372354 Lal17g0789 17 5779087 5783789 PCT
Lal19g0981 19 13727897 13731741 Lal17g0789 17 5779087 5783789 PCT
Lal17g0789 17 5779087 5783789 Lal14g1409 14 15368884 15372354 PCT
Lal17g0789 17 5779087 5783789 Lal19g0981 19 13727897 13731741 PCT