Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0981 ATGGCTCAAGAGTCTCCAATTCCAAACACAACATCAATAACACCTAAAGAGGAACAACTAGTCATAACTGATGCTGTTGCTGCTGATGAGAAAGAGAAAGATTCTGAGAAAGTAGAGAAGGAAACTTTGATTTCGGAGACTCATTTTTCTGAACCCAACAACAATAATGACCAAGTACCTGAACCTGGTTTGTTAAAGGAAGAAAGTACAAAACTTTCTGATCTTCATGAGAATCAGAATAAAGCACTTCTAGAGTTTAAGCAACTTATTCAGGAAGCACTTAACAACCACCACTTCTCTTCCCCACCCACCAAGGAACAACATTATGATAAGAAAGAGAAACAAACTGAACCTGAACCTGCACCAGAAACAACAAAAACAACTGAAGAAGTTGCAACAAAAACAGAAGAAGGAGAAAAGAAGAAAGAAACTGAGGTAGTGGTTGAAGACAAAGAAGCTGTAACTGTAGCTATAGATGAAGATGGAACAAAAACTGTGGAGGCTATTGAAGAAACCATTATTTCTTCTGTTCAACTAGAACAACAATCACCACAACTTGAAGAGAAAGATTATGATTCTAAAACAAAGGAAATAACAAACAAGGTTGATGAAGCTTCTTCTACACCATTGCCACCAGAAAAAGTATCTATCTTTGGTGTACCACTCCTAGCAGATGAAAGAAGTGATGTGATTCTCTTGAAGTTTCTTCATGCAAGAGATTTCAAGGTGAAGGAAGCTTTCACCATGATCTCCAACACAATTCAGTGGAGAAAAGAGTTTGGGATAGATGAATTAGTGGAAGAGAATTTGGATGTTGAATTGGAAAAAGTGGTGTACATGCATGGATTTGATAAAGAAGGTCACCCAGTGTGTTACAATATATATGGAGAGTTCAATAGAAAGGAGCTTTATAAGAAAACTTTTTCTGATGAAGAGAAGAGGGACAAGTTCTTAAGATGGAGAATTCAGTTTCTAGAAAAGAGTATAAGGAAACTTGATTTCAACCCTGGTGGTATATGCACCATTGTTCAGGTTAATGATCTAAAAAATTCTCCTGGACCTGGTAAATGGGAACTTAGACAAGCTACCAAACAAGCCCTTCAATTGCTTCAGGATAATTATCCTGAATTTGTAGCCAAACAGGTGTTCATCAATGTACCATGGTGGTACCTAGCAGTGAATAGAATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTATTTGCGGGTCCTTCCAAATCAATTGAGACCCTTTTGAGCTACATAGCCCCAGAGCAACTTGCTGTGAAATATGGTGGACTAAGCAAAGATGGGGAATTTGGAAATGCCGATGTTGTTACAGAAGTCACTGTTAAACCAGCAACAAAACATACCATAGAATTTCCTGTTATTGAGCAATGCATACTCTCTTGGGAGATAAGAGTAATAGGGTGGGAAGTAAGTTATGGTGCAGAATTTGTACCAACCTCAGAAGGAAGCTATACAGTAATAATCCACAAGGCTAGAAAAGTTGCTACATCAGAAGAGCCAGTGCTTTTGAACACTTTCAAAGTTGATGAGCCTGGGAAAGTTGTTCTCACCATTGATAATTCAAGCTCTAAGAAGAAGAAGATATTATACCGTTTGAAGAACAAGCCTTCCCCCTCTCACTGA 1662 0.3809 MAQESPIPNTTSITPKEEQLVITDAVAADEKEKDSEKVEKETLISETHFSEPNNNNDQVPEPGLLKEESTKLSDLHENQNKALLEFKQLIQEALNNHHFSSPPTKEQHYDKKEKQTEPEPAPETTKTTEEVATKTEEGEKKKETEVVVEDKEAVTVAIDEDGTKTVEAIEETIISSVQLEQQSPQLEEKDYDSKTKEITNKVDEASSTPLPPEKVSIFGVPLLADERSDVILLKFLHARDFKVKEAFTMISNTIQWRKEFGIDELVEENLDVELEKVVYMHGFDKEGHPVCYNIYGEFNRKELYKKTFSDEEKRDKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPGKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSIETLLSYIAPEQLAVKYGGLSKDGEFGNADVVTEVTVKPATKHTIEFPVIEQCILSWEIRVIGWEVSYGAEFVPTSEGSYTVIIHKARKVATSEEPVLLNTFKVDEPGKVVLTIDNSSSKKKKILYRLKNKPSPSH 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0981 553 CDD SEC14 273 437 IPR001251 -
Lal19g0981 553 MobiDBLite consensus disorder prediction 1 20 - -
Lal19g0981 553 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 449 545 IPR036598 -
Lal19g0981 553 Pfam CRAL/TRIO domain 276 436 IPR001251 -
Lal19g0981 553 Gene3D - 182 259 - -
Lal19g0981 553 Coils Coil 76 96 - -
Lal19g0981 553 PANTHER PATELLIN-3 PROTEIN 21 552 - -
Lal19g0981 553 ProSiteProfiles GOLD domain profile. 445 547 IPR009038 -
Lal19g0981 553 Gene3D - 261 449 IPR036865 -
Lal19g0981 553 SMART sec14_4 272 439 IPR001251 -
Lal19g0981 553 MobiDBLite consensus disorder prediction 1 18 - -
Lal19g0981 553 Pfam CRAL/TRIO, N-terminal domain 226 252 IPR011074 -
Lal19g0981 553 Gene3D GOLD domain 450 546 - -
Lal19g0981 553 MobiDBLite consensus disorder prediction 25 75 - -
Lal19g0981 553 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 267 442 IPR001251 -
Lal19g0981 553 SUPERFAMILY CRAL/TRIO domain 277 439 IPR036865 -
Lal19g0981 553 SMART CRAL_TRIO_N_2 228 253 IPR011074 -
Lal19g0981 553 MobiDBLite consensus disorder prediction 103 142 - -
Lal19g0981 553 MobiDBLite consensus disorder prediction 94 142 - -
Lal19g0981 553 PANTHER PATELLIN-1 21 552 IPR044834 GO:0008289
Lal19g0981 553 SUPERFAMILY CRAL/TRIO N-terminal domain 63 269 IPR036273 -
Lal19g0981 553 MobiDBLite consensus disorder prediction 25 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0981 Lal-Chr19 13727897 13731741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0981 232 416 Acyl Lipid Metabolism Gene Families AT5G47730 27.041 5.59e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0981 - - gmx:100804544 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0981 19 13727897 13731741 Lal19g0981 19 13727897 13731741 ECH
Lal14g1409 14 15368884 15372354 Lal19g0981 19 13727897 13731741 LSH
Lal19g0981 19 13727897 13731741 Lal17g0789 17 5779087 5783789 PCT
Lal19g0981 19 13727897 13731741 Lal4g0658 4 4993492 4996897 PCT
Lal17g0789 17 5779087 5783789 Lal19g0981 19 13727897 13731741 PCT
Lal4g0658 4 4993492 4996897 Lal19g0981 19 13727897 13731741 PCT