Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0236 ATGCTCAAGCAATTCCTCAGTAAACTTCCTCGAAAGGCATCTAATCTTGATTCGGATGAGTCAAACCGGGTCGACTCATCGCGCTCGGACTCTTCTGCCATGAAAAATCACGGGTCACACGGCGGTAATAACAACAACGCCGTGAAACGAACATCCTCGTCCGCTGTTTTTCCGGCGAGCACCGTGTCTGGAATCGAACCGTTGGTGCCGTTTAATGATGTTCCAAATGGTGAGAGGACGAACCTGCTTGTGAGCAAGTTAAGCCTTTGTTGCGTGACCTTCGATTTCACTGACCCAAGTAAAAGCATATTTGAGAAAGATGTAAAAAGGAGAACTTTGGTTGAACTAGTTGATTTTGTGGCCAATGGGAATACTAGGTTTAGTGAACCTGCTATCCTTGCTATGTGTAGAATGTGTGCTATTAATCTCTTTAGAGTTTTCTCGCCAAATTATCGGTTGAATCGCAGTGGTGGTGAGAATGATGATGAACCAACTTTTGATCCTGCTTGGCCACATTTGCAGCTTGTGTATGAATTGTTTCTTAAATTTATTAGCTCTTCTTGTCTTGACGCCAAGGTGGCAAAGAAGTACATTGATCATTGGTTTATTTCGAGGTTGCTTGAGTTGTTCGATTCGGAGGATCCTAGGGAAAGGGACTGTTTGAAGACAATTCTGCATCGGGTTTATGAGAAGTTCATGGTGCATAGACCCTTTATTCGGAAATCTATCAACAATATATTTTATAGGTTTGTGTTTGAGACTGAGAAACACAATGGGGTTGCGGAGTTGTTGGAGATTTTCGGGAGCATAATCTGTGGTTTTGCTCTGCCCTTAAAAGATGAACACAAAATGTTCTTGTGGAGGGTTTTGATCCCTTTGCACAAGCCGAAATCTGTGGCGGTCTACTCCCAGCAATTGTCATACTGTGTTACACAGTTTATTGAGAAGGAGCCTAAGTTGGCGAGCACTGTGATAAGGGGTCTGTTAAAATATTGGCCAATAACTAATAGTCAGAAAGAGGTCATTTTCCTGGGTGAACTTGAAGAAATTTTGGATGCAATTAACATGGTAGAGTTCCAGAAGGTCATGGTCCCATTGTTTTGGCGGATTGGATACTGCATTAACAGCTTACACTTTCAGGAATGTAAGCCCGTACTCTATAGCTTGTATGTTGCTCCATATTTGCTTTTTATCGTAGTTTCTTTGGGTTGGCAAGAGAAATTCATCCACACTGGGGGCATTGAAAGTAAAGGCATTCCCCTCTTAAGTCGTAACATCCTGGCTTTTAGGAGTGGCTTCTCCTCGACATCAACTGGTATTAGAGCTTGGGCGTCTATCCCCAATGTAGATGGATGCTCTTTCCAATCAAATGAGATTGATGGAGGAGTAGCTGAAAGAGCCCTTTTCTTATGGAACAATGATCACATTGTTAATTTGATTGCTCACAATCGTCAGGTGATCCTGCCAATCATATTTCCAGCTTTAGATAGGAATTCTCAAAGCCACTGGAACCAGGCAGTGCTCAACTTAACACATAATATAAGAAAGATGTTCATGGAGATGGATGAGAAGTTGTACCTGTCATGTCATTCTCACTTTAAGGAAGAAGAAGCAATATCAAGCACAGCAAATGAGAAGCAAAAGGAAGCGTGGGAACAACTAGAGCGAGTAGCCAGTCTCAGGCCTGTAATCGGAAATACAGCAGTTTTAGTGTCTCCAATTTGA 1725 0.4238 MLKQFLSKLPRKASNLDSDESNRVDSSRSDSSAMKNHGSHGGNNNNAVKRTSSSAVFPASTVSGIEPLVPFNDVPNGERTNLLVSKLSLCCVTFDFTDPSKSIFEKDVKRRTLVELVDFVANGNTRFSEPAILAMCRMCAINLFRVFSPNYRLNRSGGENDDEPTFDPAWPHLQLVYELFLKFISSSCLDAKVAKKYIDHWFISRLLELFDSEDPRERDCLKTILHRVYEKFMVHRPFIRKSINNIFYRFVFETEKHNGVAELLEIFGSIICGFALPLKDEHKMFLWRVLIPLHKPKSVAVYSQQLSYCVTQFIEKEPKLASTVIRGLLKYWPITNSQKEVIFLGELEEILDAINMVEFQKVMVPLFWRIGYCINSLHFQECKPVLYSLYVAPYLLFIVVSLGWQEKFIHTGGIESKGIPLLSRNILAFRSGFSSTSTGIRAWASIPNVDGCSFQSNEIDGGVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNSQSHWNQAVLNLTHNIRKMFMEMDEKLYLSCHSHFKEEEAISSTANEKQKEAWEQLERVASLRPVIGNTAVLVSPI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0236 574 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 70 386 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal4g0236 574 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 463 558 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal4g0236 574 Gene3D - 75 557 IPR011989 -
Lal4g0236 574 SUPERFAMILY ARM repeat 80 387 IPR016024 -
Lal4g0236 574 SUPERFAMILY ARM repeat 462 541 IPR016024 -
Lal4g0236 574 PIRSF PP2A_B56 5 396 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal4g0236 574 PIRSF PP2A_B56 451 570 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal4g0236 574 MobiDBLite consensus disorder prediction 1 49 - -
Lal4g0236 574 MobiDBLite consensus disorder prediction 27 49 - -
Lal4g0236 574 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 387 - -
Lal4g0236 574 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 451 572 - -
Lal4g0236 574 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 451 572 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal4g0236 574 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 387 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0236 Lal-Chr4 1483776 1488232 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0236 K11584 - gmx:100775273 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0252 17 1568174 1571329 Lal4g0236 4 1483776 1488232 LSH
Lal25g1076 25 14076896 14080841 Lal4g0236 4 1483776 1488232 PCT
Lal10g0009 10 100166 105115 Lal4g0236 4 1483776 1488232 PCT
Lal4g0236 4 1483776 1488232 Lal25g1076 25 14076896 14080841 PCT
Lal4g0236 4 1483776 1488232 Lal10g0009 10 100166 105115 PCT