Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0009 ATGCTCAAGAATATCCTTAACAAGCTTCCTAGGAAGTCAAAACTTGATTCGGAAGGTGACTTATCACATTCCACCGTTTCTGGAATAAGCCACCATCAGCAAGGTAGTGGTGGTGTTTCTTCTGCTGCTGCGAAGCGAGCTTCCGCCTCGGCTGTTTTTCCGGCGAGCATGGTGTCTGGGATTGAACCCTTGGTGCCATTCAAGGATGTTCCAAATTCTGAGAAGATGAACCTTTTTGTGAGCAAGTTGAGCCTTTGTTGTGTTACTTTCGATTTCGCCGACCCTGGTAAGAATATTGTGGAGAAAGATGTGAAAAGGAGAACATTGTTTGAACTTGTTGATTTTGTGGCTTGTGGTGGTTCAATGAAATTTAGTGAACCTGCTATTCTTGCAATGTGTAAAATGTGTTCTATTAATCTCTTTAGAGTTTTCCCACCAAATTATAGGGCTAATGGAGGTGTTAGTGAGAATGATGATGATGAGCCTGTGTTTGATCCTGCTTGGCCACATTTACAATTTGTGTATGAATTGCTGCTTAAGTTTATCTCTTCTTCGTGCCTTGATTCTAAGATGGCGAAGAAGTACATTGATCACTCATTTATCTCCAAGTTGCTTGAATTGTTTGATTCCGATGATCCTAGAGAAAGAGACTGCTTGAAGACAATTTTGCATAGGATTTATGGGAAGTTCATGGTGCATAGACCCTTTATTCGGAAATCTATGAACAATATATTTTATCAATTCGTGTTTGAGACTGACAAACACAATGGGATTGCTGAGTTGTTGGAGATTTTTGGGAGTGTGATTAGTGGGTTTGCTTTACCTTTGAAAGAGGAACACAAAATGTTCTTGTGGAGAGTTTTAATCCCCTTGCACAAGCCGAAATCTATGGCAGTCTACTTTCAACAATTGTCTTACTGTATTACGCTGTTTATAGAAAAGGAGCCCAAATTAGCAAGTATTGTGATAAGGGGTTTGTTAAAATATTGGCCGGTAACGAATAGTCAGAAAGAGGTGATGTTTCTTGGTGAACTGGAAGAAATTTTGGAAGTAATTAACATGGTTGAGTTCCAGAGGGTCATGGTCCAATTGTTTTGGCGGATTGGGTGTTGTATTAATAGCTTACACTTTCAGGTAGCTGAAAGAGCCCTGTACTTATGGAACAATGACCACATTGTCAACTTGATTGCTCATAACCGTGAAGTGATCCTGCCTATCATATTTCCTGCCTTAGATAGGAATGATCAAAGCCATTGGAACCCAGCAGTCATCAACCTAACTCATAATATTAGAAAGATGTTTTTGGAGATGGATGAGAAACTCTTCCTTTCTTGTCATTCTCACTTTAAGGAGGATGAAGTAATTTTAAACGCAGAAGCTGAGAAGCGGAAGGAAGCTTGGAAACAACTAGAGCATGCTGCTAGTCTCAAGCCTGTAATAGGAAATACTGCTGTTCTAGTTTCTCCATTAATGACCTGA 1479 0.3989 MLKNILNKLPRKSKLDSEGDLSHSTVSGISHHQQGSGGVSSAAAKRASASAVFPASMVSGIEPLVPFKDVPNSEKMNLFVSKLSLCCVTFDFADPGKNIVEKDVKRRTLFELVDFVACGGSMKFSEPAILAMCKMCSINLFRVFPPNYRANGGVSENDDDEPVFDPAWPHLQFVYELLLKFISSSCLDSKMAKKYIDHSFISKLLELFDSDDPRERDCLKTILHRIYGKFMVHRPFIRKSMNNIFYQFVFETDKHNGIAELLEIFGSVISGFALPLKEEHKMFLWRVLIPLHKPKSMAVYFQQLSYCITLFIEKEPKLASIVIRGLLKYWPVTNSQKEVMFLGELEEILEVINMVEFQRVMVQLFWRIGCCINSLHFQVAERALYLWNNDHIVNLIAHNREVILPIIFPALDRNDQSHWNPAVINLTHNIRKMFLEMDEKLFLSCHSHFKEDEVILNAEAEKRKEAWKQLEHAASLKPVIGNTAVLVSPLMT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0009 492 PIRSF PP2A_B56 7 488 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal10g0009 492 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 66 474 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal10g0009 492 Gene3D - 71 473 IPR011989 -
Lal10g0009 492 MobiDBLite consensus disorder prediction 9 40 - -
Lal10g0009 492 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 488 - -
Lal10g0009 492 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 488 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal10g0009 492 SUPERFAMILY ARM repeat 77 470 IPR016024 -
Lal10g0009 492 MobiDBLite consensus disorder prediction 20 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0009 Lal-Chr10 100166 105115 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0009 K11584 - gmx:100781390 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1076 25 14076896 14080841 Lal10g0009 10 100166 105115 LSH
Lal10g0009 10 100166 105115 Lal17g0252 17 1568174 1571329 PCT
Lal10g0009 10 100166 105115 Lal4g0236 4 1483776 1488232 PCT
Lal17g0252 17 1568174 1571329 Lal10g0009 10 100166 105115 PCT
Lal4g0236 4 1483776 1488232 Lal10g0009 10 100166 105115 PCT