LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal17g0252	ATGCTCAAGCAATTCCTCAGTAAACTTCCTCGAAAGGCGACGAAACTTGACTCGGACGAGTCAACCAGGGTCAATTCGTTGCGGTCAGACTCTTCGGCCGTAAAAAATCACCGGCCACACGGCGGTAATAATAGTAACACCGCCAAAAGAACATCCTCATCCGCGGTTTTTCCATCGAGCACCGTAGCTGGGATTGAACCGTTGTTGCCGTTTAAGGATGTTCCAAATGGTGAGAAGATGAATCTGTTTGTGAGCAAGTTGAGCCTTTGTTGTGTGATCTTCGATTTCAGTGACCCAGGTAAAAGCATAGTTGAGAAAGATGTAAAGAGGAGAACTTTGGTTGAACTTGTTGATTTTGTGGCCAATGTGAACATGAGGTTTAGTGAACCTGCTACCCTTGCTATGTGTAGAATGTGTGCTGTTAATCTCTTCAGAGTTTTCCCGCCAAATTATGGGTCGAATCGTGGTGGTGGTGAGAATGATGATGATGAACCAACTTTTGATCCTGCTTGGTCACATTTGCAGCTTGTGTATGAATTATTGCTTAAATTTATTAGTTCTCCTTGCCTTGATGCCAAGATGGCAAAGAAGTACATTGATCATTGGTTTATTTCGAGGTTGCTTGAGTTGTTCGATGCAGAGGATCCTAGGGAAAAGGACTGTTTGAAGACAATCCTGCATAGAGTTTATGGGAAATTCATGGTGCATAGACCCTTCATTCGGAAATCGATTAACAATATATTTTATAGGTTTGTGTTTGAGACTGAGAAACACAATGGAGTTGCTGAGTTGTTGGAGATTTCCGGGAGCATAATCAGTGGTTTTGCTCTGCCATTGAAAGAGGAACACAAGATGTTCTTGTGGAGGGTTTTGATCCCCTTGCACAAGGCAAAACCTCTGGGGGTCTACTTCCAGCAATTGACATACTGTGTTACACAGTTCATAGAGAAGGAGCCCAAGTTGGCGAGCACTGTGATAATGGGTTTGTTAAAATATTGGCCAATTACAAATAGTCAGAAAGAGGTCATGTTCCTGGGTGAACTGGAAGAAATTTTGGAAGCTATTAACATGGTAGAGTTCCAGAAGGTCATGGAGCCATTGTTTTGGCGGATTGGATGCTGCATGAACAGCTTACACTTTCAGGTAGCTGAAAGAGCCCTTTTCTTATGGAACAACGACCGCATTGTCAATTTGATTGCTCACAACCGTCAGGTGATCCTACCGATCATATTTCCAGCTTTAGATAGGAACTCTCAAAGCCACTGGAATCAGGCAGTACTCAACTTAACTCATAATATAAGAAAGATGTTCATGGAGATGGATGAGAAGCTATACCTGTCATGTCATTCTCATTTTAAGGAGGAAGAAGCGATGTCAAGCGCCACAGTCGAGAAGCGGAAGGAAGCATGGAAACAACTAGAGCGTATAGCCAGTCTCAAGCCTGTAATTGGAAATACTGCAGTTTTAGTGTCTCCAATTTGA	1482	0.4285	MLKQFLSKLPRKATKLDSDESTRVNSLRSDSSAVKNHRPHGGNNSNTAKRTSSSAVFPSSTVAGIEPLLPFKDVPNGEKMNLFVSKLSLCCVIFDFSDPGKSIVEKDVKRRTLVELVDFVANVNMRFSEPATLAMCRMCAVNLFRVFPPNYGSNRGGGENDDDEPTFDPAWSHLQLVYELLLKFISSPCLDAKMAKKYIDHWFISRLLELFDAEDPREKDCLKTILHRVYGKFMVHRPFIRKSINNIFYRFVFETEKHNGVAELLEISGSIISGFALPLKEEHKMFLWRVLIPLHKAKPLGVYFQQLTYCVTQFIEKEPKLASTVIMGLLKYWPITNSQKEVMFLGELEEILEAINMVEFQKVMEPLFWRIGCCMNSLHFQVAERALFLWNNDRIVNLIAHNRQVILPIIFPALDRNSQSHWNQAVLNLTHNIRKMFMEMDEKLYLSCHSHFKEEEAMSSATVEKRKEAWKQLERIASLKPVIGNTAVLVSPI	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal17g0252	493	Gene3D	-	75	476	IPR011989	-
	Lal17g0252	493	MobiDBLite	consensus disorder prediction	25	55	-	-
	Lal17g0252	493	PIRSF	PP2A_B56	5	490	IPR002554	GO:0000159\|GO:0007165\|GO:0019888
	Lal17g0252	493	SUPERFAMILY	ARM repeat	81	473	IPR016024	-
	Lal17g0252	493	Pfam	Protein phosphatase 2A regulatory B subunit (B56 family)	70	477	IPR002554	GO:0000159\|GO:0007165\|GO:0019888
	Lal17g0252	493	PANTHER	SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT	1	491	-	-
	Lal17g0252	493	MobiDBLite	consensus disorder prediction	10	55	-	-
	Lal17g0252	493	MobiDBLite	consensus disorder prediction	10	24	-	-
	Lal17g0252	493	PANTHER	SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B	1	491	IPR002554	GO:0000159\|GO:0007165\|GO:0019888

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal17g0252	Lal-Chr17	1568174	1571329	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal17g0252	K11584		-	gmx:100775273	818.15

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal17g0252	17	1568174	1571329	Lal4g0236	4	1483776	1488232	LSH
	Lal25g1076	25	14076896	14080841	Lal17g0252	17	1568174	1571329	PCT
	Lal10g0009	10	100166	105115	Lal17g0252	17	1568174	1571329	PCT
	Lal17g0252	17	1568174	1571329	Lal25g1076	25	14076896	14080841	PCT
	Lal17g0252	17	1568174	1571329	Lal10g0009	10	100166	105115	PCT