Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0218 ATGTCTAAAGTTGTTGGCTTTACTGGTGAGGATTTTTACCTTGGGGGGTCACTATATCCTAACCCGAAGGAAGCAAATCTCTTCTTGTCTCTTGGCCAGCCAAGTGGCTTTTACTACCCTCTTTCAAAGAGGTCTCGTGTCAGTGTTCCATTTGATTTCAGTGGAGAATGGTTTGTACAGAAGCCGAAAACATCTATTGAATCTTTGCCAGATGAGTGTCTCTTTGAAATCCTTAGAAGGTTGCCTGCTGGCCAAGATAGGAGCTTATGCGCTTCAGTATCCAAACGCTGGCTTATGCTTCTGAGCAACATCTGTAAGGATGAAATTTGCATCAATGAAAGTGCCATAAATGAAAAGGAGGGTAGTGATGAGGGATATGGAGACGAAGGATACCTGTCACGAACCTTGGAAGGAAAGAAGGCAACCGATGTTAGACTCGCTGCCATTGCTGTTTGTACCACATCTCGAGGAGGATTGGGAAAGCTATCGATTCGTGGAAACAACAAATCAGAGTGTGGTGTGACTGATCTTGGTCTCAAGGCAATTGGTTGTGGATGCCCTTCTCTGAAGTCCTTATCTCTATGGAATGTTGCTACCGTTGGTGATTCAGGCCTGATTGAGATTGCTGCTGGGTGTCAGCAGTTACAGAGGCTTGACCTCATCAACTGCCCTTCAATTTCTGACAAGTCTTTAGTTACAGTTGCAATGAAGTGCCCGAATCTGACCGAGTTGTCATTAGAATCATGTCCTAACATTGGTAATGAAGGTCTGCAGGCTATTGGAAAGTTGTGTCCCAATCTCAGATCTGTATCAATCAAGGGTTGCACTGGAGTTGGTGATCAGGGAATTGGTGGCCTATTATCTTCAAGTTCTCATGTTTTGACAAAGGTGGAACTAGAGTCGCTGATGGTTTCAGATCTCTCTCTAGCAGTTATTGGACATTATGGCATTTCAGTTACTGATCTTGTCCTTAATAGCCTCCCGGATGTCACTGAGAGAGGATTCTGGACTATGAGTAATGGTCGTGCACTGCAGAAACTGAAGTCACTCACAATCAGATCTTGCCAAGGAGTAACAGATGTTGGGCTTGAAGCTATTGGAAAGGGTTGTCCAAATGTTAAATACTTCCAGCTTTGCAAGTGTCCATTTCTGTCAGACAATGGGTTGGTATCATTCGCCAAGGCTGCTCCATCACTCGAGAACCTGCAATTAGAAGAGTGCCACAGGGTTACCCAATTTGGGTTTTTTGGTCTCCTTTTTACTTGTGGTGCAAAATTGAAGGTTCTTACCATGGTGAGCTGTTATGGAATCAAAGATATGAACTTGAGATTGCCTGAAGTGTCTCCTTCTGTATCACTCTTGTCATTGTCAATCAGTAACTGCCCCGGATTTGGTAATGGTACCTTTGCTGTGTTGGGAAAGCTGTGTCCTCAGCTTCAGAATGTTGAATTGAATGGACTAGAGGGAATAACAGATGCAGGGTTTCTTTCACTGTTTGAGAGCTCCAAGGCTGGTCTGGTTAAAGTTAATCTCCATGGTTGCATAAATCTTACCGACGAGGTAGTTTTCTCCATAGCCAATTTGCACGGGTCGACTCTTGATGTGCTAAACCTTGATGGCTGCAAGAAAATCAGTGATGCTAGCTTGAAAGCAATTGCCTCCAACTGTCAAGTGCTCTCCGATCTCAATGTTTCCAGGTGTGCAATCACTGACGCTGGGATCGCAGCCCTTGCACGCGGGAACCTGCATAATCTGAAGATACTTTCTTTGGCATGTTGCTCATCGGTTTCAAACAAGAGTGTGTCTGCTTTTAAAAAATTGGGATGTACCCTCACGGGATTAAACATCCTTGCTTGCAATAGAATCAGCAGCAGCGCAGTTCTTAAGCTTCTGGAACATCTTTGGACCTGTGATATCCTCTCCTAA 1926 0.4434 MSKVVGFTGEDFYLGGSLYPNPKEANLFLSLGQPSGFYYPLSKRSRVSVPFDFSGEWFVQKPKTSIESLPDECLFEILRRLPAGQDRSLCASVSKRWLMLLSNICKDEICINESAINEKEGSDEGYGDEGYLSRTLEGKKATDVRLAAIAVCTTSRGGLGKLSIRGNNKSECGVTDLGLKAIGCGCPSLKSLSLWNVATVGDSGLIEIAAGCQQLQRLDLINCPSISDKSLVTVAMKCPNLTELSLESCPNIGNEGLQAIGKLCPNLRSVSIKGCTGVGDQGIGGLLSSSSHVLTKVELESLMVSDLSLAVIGHYGISVTDLVLNSLPDVTERGFWTMSNGRALQKLKSLTIRSCQGVTDVGLEAIGKGCPNVKYFQLCKCPFLSDNGLVSFAKAAPSLENLQLEECHRVTQFGFFGLLFTCGAKLKVLTMVSCYGIKDMNLRLPEVSPSVSLLSLSISNCPGFGNGTFAVLGKLCPQLQNVELNGLEGITDAGFLSLFESSKAGLVKVNLHGCINLTDEVVFSIANLHGSTLDVLNLDGCKKISDASLKAIASNCQVLSDLNVSRCAITDAGIAALARGNLHNLKILSLACCSSVSNKSVSAFKKLGCTLTGLNILACNRISSSAVLKLLEHLWTCDILS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0218 641 SUPERFAMILY RNI-like 170 409 - -
Lal4g0218 641 Pfam F-box domain 67 105 IPR001810 GO:0005515
Lal4g0218 641 Gene3D Ribonuclease Inhibitor 449 501 IPR032675 -
Lal4g0218 641 Gene3D Ribonuclease Inhibitor 133 237 IPR032675 -
Lal4g0218 641 Gene3D Ribonuclease Inhibitor 502 638 IPR032675 -
Lal4g0218 641 SMART fbox_2 69 110 IPR001810 GO:0005515
Lal4g0218 641 Pfam Leucine Rich repeat 237 260 IPR001611 GO:0005515
Lal4g0218 641 Pfam Leucine Rich repeat 556 578 IPR001611 GO:0005515
Lal4g0218 641 Pfam Leucine Rich repeat 345 366 IPR001611 GO:0005515
Lal4g0218 641 SUPERFAMILY F-box domain 63 102 IPR036047 GO:0005515
Lal4g0218 641 PANTHER UNCHARACTERIZED 15 631 - -
Lal4g0218 641 SMART LRR_CC_2 503 528 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 582 607 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 450 475 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 186 211 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 212 237 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 238 263 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 476 501 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 396 421 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 370 395 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 264 289 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 556 580 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 530 555 IPR006553 -
Lal4g0218 641 SMART LRR_CC_2 344 369 IPR006553 -
Lal4g0218 641 Gene3D Ribonuclease Inhibitor 238 448 IPR032675 -
Lal4g0218 641 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 15 631 - -
Lal4g0218 641 Gene3D - 60 110 - -
Lal4g0218 641 SUPERFAMILY RNI-like 336 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0218 Lal-Chr4 1371950 1375330 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0218 K14515 - gmx:100805418 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0218 4 1371950 1375330 Lal4g0218 4 1371950 1375330 ECH
Lal17g0231 17 1436531 1440003 Lal4g0218 4 1371950 1375330 LSH
Lal21g0336 21 2242547 2245930 Lal4g0218 4 1371950 1375330 LSH
Lal10g0023 10 240316 251158 Lal4g0218 4 1371950 1375330 PCT
Lal4g0218 4 1371950 1375330 Lal10g0023 10 240316 251158 PCT