Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0023 ATGTGTTCTAGGTGTTGCTTGATACCAGAGTTTTCTATGAACAAACCTTGCTGCTCTTTTTTAATGTTTTTTCGTGTCTGTTTTCGCACTCTGGTGCTTTCTCTCATGGAAAAGTTTAAGCTCAAATGCAAGGGGCTTTTCCATAGCAAAAGTGGTTGTGTTGGATGCTGCACAAAAACTCTGGTGATTATTTCAATGGATGAGGCATCTAAAGTAGCAAGGACTCAAAGGCAAACGGCGAATAAGTCGGAAGATCTGTGGAGCACCAGCAGTGTTGAAATGGACCATAGTGCAGCTCAGTCCCAAAGAAGCATCTCGTCAATTGGAATATCAAATAATCCTTCTGATCCTCAAAGTAGTACCGGCAATCAAATCGATCCTCCCGAATTTGTCAATCATGGCAAGTTTTCAATTACGAGTCTTCTTCTCTGGAACCAGATAAGGCAACAATGGGTTGGAAATAAAAAGTCTCAGAGTCACAAAAAAGTTCGAGAACCAAGAATAAGTACAAATGCTAGATATGACAATCTACTTGGGAGCAATAAACCCATCCTTCTTGGATTTATCGATTCATCTTCTGTTTTATTCAATTCATCGCTTTATTTCATGATGGGAGGTGCTGATTTTTGGCCTGGTGGTTCAATATTCGCCAATGACAAGGAAGCCCTTCCTCGTGGCCATCAAGTCGATGTTTACTTCCCTCCTCGGAAGAGATCACGCATCAACACTCCATTTGTTTTCAGTGGAGAATGGTTTGAGCAGAAGCATAAAACTTCTTTTGAATCTTTGCCAGATGAATGCCTTTTCGAGATCTTTAGAAGGTTGCTCGAAGGCGAAGATAGGAGTGCTTGTGCTTGTGTTTCCAAGCGTTGGCTAACACTTGTAAGCAACATTTGTAAGAATGAAATCGGCAGCAACATAAAAAATATGAGACTGGAGAACGAGTTGAGTGAAATGGGTCATGAACTCGGAGGTGAGGGATACCTCTCACGAAGCTTGGAAGGGAAGAAGGCAACTGATGTTAGACTTGCTGCCATTTCTGTTGGGACTGCATCTCGTGGAGGCTTAGGGAAGCTTTCTATCCGTGGAAGCAATTCAGATCGTGGTGTGACTAATCTAGGACTTAAAGCAGTTTCTCGTGGATGTCCTTCTCTAAAGGCTCTTTCTATATGGAATGTTGCTACCATTGGTGACAGAGGCCTAATTGAGATTGCTAGTGGATGTCAACAACTAGAGAAGCTCGACCTTTGCAAGTGCCCCACAATTTCTGACAAGGCTTTAATCTCAGTTGCAATGAATTGCCCAAACCTGACCGAGTTATTGTTGGAATCATGTCCAAACATTGGTAATGAAGGTCTAGAAGCTATTGGCAAGTGCTGCTCCAATCTAAGGTCTATATCTATCAAGGACTGCACCAGTGTTAGTGATCAAGGAATTGCTAGCTTGTTTTCTTCGGCTTCTTTGTCCATGACAAAGGTGAGGCTCCAGGCACTGACTGTTTCTGATCTCTCTCTGGCTGTTATTGGACACTATGGCAAGGCAGTTACAGATCTCGTCCTTAATTTCCTCCCGGATGTCAGTGAGAAGGGTTTCTGGGTTATGGGCAACGGTAATGGATTGCAGAAACTAAAGTCACTTACAGTTGCCTCATGCCAAGGCGCAACAGATATTGGGCTTGAAGCTGTAGGAAAGGGTTGTCCAAATATGAAAAGTGCCCACCTTCGTAAGTGTGCGTTTCTCTCAGACAACGGGCTGGTTTCATTCACCAAGGCCGCTTTATCATTAGATAGCCTGCAGTTGGAAGAGTGCCACAGGATTACCCAAAATGGGTTTTTTGGTGTCCTTTTCAATTGTGGTGCAAATTTGAAGGCTATATCACTCGTAAGCTGCTTTGGGATCAAAGATATGAACTTGTCATTGTCATCAATATCTCATTGTGAATCACTCAGATCATTATCAATCTGTAACTGCCTGGGCTTTGGCAACACTACCCTATATGAACTTGGAAAGTTGTGCCCCCAGCTTCAATATATTGAACTGAGAGGACTTGAGGGAGTGACAGACGATGGATTTCTTCCACTGCTCAAGAGCTCTAAGGCTGGTCTGGTTAAAGTTAATCTCAGTGGTTGCATAAATCTGACAGACAAATTAGTTCTATACTTGGCCAATCTGCATGGTTGGACTCTTGAGACTCTGAACCTTGACGGTTGTAAGAATATCACCGATTCTAGCTTGATGGCAATTTCCGAAAATTGTCCATTGCTCTGTGATCTGGATATTTCTAAATGTGCTATCACTGATGCTGGGATTTCAGCCCTGGCTGATGCGAAACAGTTAAATCTGCAGGTTCTTTCTTTATCAGGCTGCACTTTGGTTTCAGATAGGAGCTTGCCTGCATTGACAAAAATAGGCCACACTCTTTTGGGACTAAGCATCCAGCATTGCAATGGAATCAGCAGCAGCACAATTGACATGCTTTTGGAACTTCTTTGGAGGTGTGACATCCTCTCCTGA 2514 0.4304 MCSRCCLIPEFSMNKPCCSFLMFFRVCFRTLVLSLMEKFKLKCKGLFHSKSGCVGCCTKTLVIISMDEASKVARTQRQTANKSEDLWSTSSVEMDHSAAQSQRSISSIGISNNPSDPQSSTGNQIDPPEFVNHGKFSITSLLLWNQIRQQWVGNKKSQSHKKVREPRISTNARYDNLLGSNKPILLGFIDSSSVLFNSSLYFMMGGADFWPGGSIFANDKEALPRGHQVDVYFPPRKRSRINTPFVFSGEWFEQKHKTSFESLPDECLFEIFRRLLEGEDRSACACVSKRWLTLVSNICKNEIGSNIKNMRLENELSEMGHELGGEGYLSRSLEGKKATDVRLAAISVGTASRGGLGKLSIRGSNSDRGVTNLGLKAVSRGCPSLKALSIWNVATIGDRGLIEIASGCQQLEKLDLCKCPTISDKALISVAMNCPNLTELLLESCPNIGNEGLEAIGKCCSNLRSISIKDCTSVSDQGIASLFSSASLSMTKVRLQALTVSDLSLAVIGHYGKAVTDLVLNFLPDVSEKGFWVMGNGNGLQKLKSLTVASCQGATDIGLEAVGKGCPNMKSAHLRKCAFLSDNGLVSFTKAALSLDSLQLEECHRITQNGFFGVLFNCGANLKAISLVSCFGIKDMNLSLSSISHCESLRSLSICNCLGFGNTTLYELGKLCPQLQYIELRGLEGVTDDGFLPLLKSSKAGLVKVNLSGCINLTDKLVLYLANLHGWTLETLNLDGCKNITDSSLMAISENCPLLCDLDISKCAITDAGISALADAKQLNLQVLSLSGCTLVSDRSLPALTKIGHTLLGLSIQHCNGISSSTIDMLLELLWRCDILS 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0023 837 Pfam Leucine Rich repeat 757 774 IPR001611 GO:0005515
Lal10g0023 837 Pfam Leucine Rich repeat 433 456 IPR001611 GO:0005515
Lal10g0023 837 Pfam Leucine Rich repeat 728 749 IPR001611 GO:0005515
Lal10g0023 837 PANTHER UNCHARACTERIZED 218 828 - -
Lal10g0023 837 Pfam Protein of unknown function (DUF4050) 92 167 IPR025124 -
Lal10g0023 837 SUPERFAMILY RNI-like 526 833 - -
Lal10g0023 837 Gene3D Ribonuclease Inhibitor 332 433 IPR032675 -
Lal10g0023 837 SUPERFAMILY F-box domain 253 297 IPR036047 GO:0005515
Lal10g0023 837 PANTHER EIN3-BINDING F-BOX PROTEIN 1 218 828 - -
Lal10g0023 837 Pfam F-box-like 261 296 IPR001810 GO:0005515
Lal10g0023 837 SMART LRR_CC_2 540 565 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 408 433 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 434 459 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 752 776 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 460 485 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 699 724 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 778 803 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 672 697 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 726 751 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 382 407 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 566 591 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 592 617 IPR006553 -
Lal10g0023 837 SMART LRR_CC_2 646 671 IPR006553 -
Lal10g0023 837 Gene3D Ribonuclease Inhibitor 434 632 IPR032675 -
Lal10g0023 837 Gene3D - 253 302 - -
Lal10g0023 837 SMART fbox_2 263 303 IPR001810 GO:0005515
Lal10g0023 837 Gene3D Ribonuclease Inhibitor 636 837 IPR032675 -
Lal10g0023 837 MobiDBLite consensus disorder prediction 107 126 - -
Lal10g0023 837 SUPERFAMILY RNI-like 377 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0023 Lal-Chr10 240316 251158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0023 K14515 - gmx:100820247 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0023 10 240316 251158 Lal10g0023 10 240316 251158 ECH
Lal10g0023 10 240316 251158 Lal17g0231 17 1436531 1440003 PCT
Lal10g0023 10 240316 251158 Lal21g0336 21 2242547 2245930 PCT
Lal10g0023 10 240316 251158 Lal4g0218 4 1371950 1375330 PCT
Lal17g0231 17 1436531 1440003 Lal10g0023 10 240316 251158 PCT
Lal21g0336 21 2242547 2245930 Lal10g0023 10 240316 251158 PCT
Lal4g0218 4 1371950 1375330 Lal10g0023 10 240316 251158 PCT