Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0231 ATGGTAAGTGTTGAGGATTTTTACCCTGGGGGATCACTATATCCTAATCCCAAGGAAGCGAATCTGTTCTTGTCTCTTGGTCATCAAGCTGGGTTTTACTACCCTCTTCCGAAGAGGTCCCGTGTCAGTGTTCCATTTGATTTCAGTGGAGAATGGTTTGTGCAGAAGCCAAAGACAACTATTGAATCTTTGCCAGATGAGTGTCTCTTTGAGATCCTGAGAAGGTTGCCAGTTGGCCAAGATAGGAGTCAATGCGCTTCAGTATCGAAGCGCTGGCTTATGCTTCTGAGCAGTATATCCAAGAAAGAAATTTGCATCAACGAAAAGGATGGTGGTGATGAGGGACATGGCGATGAAGGATACCTATCACGAACCTTGGAAGGGAAGAAGGCAACCGATGTTAGGCTCGCTGCCATTTCTGTTAATACTGCATCTAGTGGAGGATTGGGAAAGCTTTCGATTCGTGGAAACAACAAATCAGAATGTGGGGTGACTGATCTTGGTCTAAAAGCAATTGGTTGTGGATGCCCGTCTTTGAAGTCCTTTTCTCTATGGAATGTTGCTAGTGTTGGTGATGCAGGTCTGATTGAGATCGCTGCTGGGTGTCAGCAATTACGGAGACTAGACCTCATCAACTGCCCCGCAATTTCTGACAAGTCTTTAGTTGCAGTTGCGATGAAGTGCCCTAATCTGTTGAATTTATCAATAGAATTATGTCCTAACATTGGTAATGAAGGTCTGCAAGCTATTGGGAAGTTGTGTCCCAATCTAAGGTCTGTGTCAATCAAGGATTGCACTGGAGTTGGTGATCAGGGAATTACTGGCCTATTAACTTCAACATCTCATGTTTTGACAAAGGTGGAACTTGTGTCACTGACGGTTTCGGATCTCTCTCTAGCAGTTATTGGGCATTATGGCATTTCAGTTAATGATCTTGTCCTTAATTGCCTCCCAAATGTCACTGAGAGGGGATTCTGGACTATGAGCAACGGTCGTGCACTGCAGAAACTAAAGTCACTCACAATTGGATCTTGCCGAGGAGTAACAGATGTTGGGCTTGAAGCTATTGGAAAGGGTTGTCCAAATATTAAATACTTCCAGCTTCGCAAGTGTCCATTTCTCTCAGACAATGGGTTGGTATCATTTGCCAAGGCTGCTCCATCACTTGAGAACTTGCAATTGGAAGAGTGCCACAGGGTTACCCAATTTGGGTTTTTTGCTCTCCTTTTTACCTGTGGTGCAAAATTGAAGGTTCTTACCCTGGTGAGCTGCTACGGGATCAAAGATATGAACGTGAAATTGCCTGAAGTGTTTCCATGTGTATCACTCTCGTCATTGTCAATCCGTCACTGCCCTGGATTTGGTAATGCTACCCTTGCTGTGTTGGGAAAGCTGTGTCCTCAGCTTCAGAATGTTGAATTGAATGGACTTGAGGGAATAACGGATGCAGGGTTTCTTCCACTGCTTGAGAGTTCTAAGGCTGGCCTGGTTAAAGTTAATCTCCGTGGTTGCGTAAATCTTACCGACAAGGTAGTTTCCTCCATTGCCAATTTGCATTGGTCGTCTCTTGATGTGCTAAATCTTGATGGTTGCAAGGAAATTGGTGATGCTAGCTTGAAGGTAATCGCCTCCAACTGTCAAGTGCTCTCGGATCTCGATGTTTCAAGGTGTGCAATCACTGACACTGGGATTGCAGCCCTTGCACAGGGGAACCTACATAGTCTGAAGATACTTTCTCTGGCGCGTTGTGCATCGGTTTCAAACAAAAGTGTGCCTGCTTTGAAAAAATTGGGCCGTACCCTTGTTGGATTAAACATCCTTGCTTGCAATAGACTCGGCAGCAGTGCAGTTATCAAGCTTCTGGAACATCTCTGGACCTGTAATATCCTCTCGTTTTCCTATCATTGGAAATCTGTTGTTTTTTTGGCATCCAATTGTTGGATTCCATTTTTTAAATGGCTGTGTCTCTCTGAGAAACTTAGTTACCGGATTCTGGAGATTTATGATGCCTTGTCTTTCAAGGGCCTTGGTCATGGCAGCAAGTTATACAAGGCTGCTATGAAACAACCCTTACTCTTTGAAAAG 2085 0.4436 MVSVEDFYPGGSLYPNPKEANLFLSLGHQAGFYYPLPKRSRVSVPFDFSGEWFVQKPKTTIESLPDECLFEILRRLPVGQDRSQCASVSKRWLMLLSSISKKEICINEKDGGDEGHGDEGYLSRTLEGKKATDVRLAAISVNTASSGGLGKLSIRGNNKSECGVTDLGLKAIGCGCPSLKSFSLWNVASVGDAGLIEIAAGCQQLRRLDLINCPAISDKSLVAVAMKCPNLLNLSIELCPNIGNEGLQAIGKLCPNLRSVSIKDCTGVGDQGITGLLTSTSHVLTKVELVSLTVSDLSLAVIGHYGISVNDLVLNCLPNVTERGFWTMSNGRALQKLKSLTIGSCRGVTDVGLEAIGKGCPNIKYFQLRKCPFLSDNGLVSFAKAAPSLENLQLEECHRVTQFGFFALLFTCGAKLKVLTLVSCYGIKDMNVKLPEVFPCVSLSSLSIRHCPGFGNATLAVLGKLCPQLQNVELNGLEGITDAGFLPLLESSKAGLVKVNLRGCVNLTDKVVSSIANLHWSSLDVLNLDGCKEIGDASLKVIASNCQVLSDLDVSRCAITDTGIAALAQGNLHSLKILSLARCASVSNKSVPALKKLGRTLVGLNILACNRLGSSAVIKLLEHLWTCNILSFSYHWKSVVFLASNCWIPFFKWLCLSEKLSYRILEIYDALSFKGLGHGSKLYKAAMKQPLLFEK 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0231 695 Pfam Leucine Rich repeat 227 250 IPR001611 GO:0005515
Lal17g0231 695 Pfam Leucine Rich repeat 546 568 IPR001611 GO:0005515
Lal17g0231 695 Pfam Leucine Rich repeat 335 356 IPR001611 GO:0005515
Lal17g0231 695 Pfam Leucine Rich repeat 254 276 IPR001611 GO:0005515
Lal17g0231 695 Gene3D - 55 101 - -
Lal17g0231 695 SUPERFAMILY RNI-like 299 628 - -
Lal17g0231 695 SUPERFAMILY F-box domain 57 98 IPR036047 GO:0005515
Lal17g0231 695 Pfam F-box domain 62 100 IPR001810 GO:0005515
Lal17g0231 695 Gene3D Ribonuclease Inhibitor 434 491 IPR032675 -
Lal17g0231 695 PANTHER UNCHARACTERIZED 12 619 - -
Lal17g0231 695 SUPERFAMILY RNI-like 160 337 - -
Lal17g0231 695 SMART fbox_2 64 105 IPR001810 GO:0005515
Lal17g0231 695 Gene3D Ribonuclease Inhibitor 492 672 IPR032675 -
Lal17g0231 695 SMART LRR_CC_2 176 201 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 334 359 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 386 411 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 520 545 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 202 227 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 572 597 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 546 570 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 493 518 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 466 491 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 360 385 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 254 279 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 440 465 IPR006553 -
Lal17g0231 695 SMART LRR_CC_2 228 253 IPR006553 -
Lal17g0231 695 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 12 619 - -
Lal17g0231 695 Gene3D Ribonuclease Inhibitor 237 433 IPR032675 -
Lal17g0231 695 Gene3D Ribonuclease Inhibitor 124 236 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0231 Lal-Chr17 1436531 1440003 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0231 K14515 - gmx:100805418 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0231 17 1436531 1440003 Lal17g0231 17 1436531 1440003 ECH
Lal17g0231 17 1436531 1440003 Lal21g0336 21 2242547 2245930 LSH
Lal17g0231 17 1436531 1440003 Lal4g0218 4 1371950 1375330 LSH
Lal10g0023 10 240316 251158 Lal17g0231 17 1436531 1440003 PCT
Lal17g0231 17 1436531 1440003 Lal10g0023 10 240316 251158 PCT