Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0232 ATGGGTCAGGGTCTGAGTTGCAGAGGGAGCCATGAACATGGCCTTTTCCATGCTGTTCAGCATGGTGATTTTGAAACTTTTGCAACTCTTTTAGAGACACACCCTTCTCTTATGAACCATACTACTGTCTATGATCGTCACTCTCCTCTTCATATTGCTGCTGCCAATGGCCAGATCCAGATTTTAACTAGGCTTTTAAATGGTTCTGTGAATCCAGATGTTTTGAATCGCCAAAAACAGACCCCGCTTATGTTGGCAGCAATGCACGGAAAGATTGCATGTGTGCAAAAACTACTTGAAGCGGGTGCTAATGTATTAATGTTTGATTCAGTTTATGGAAGAACCTGCTTGCACTATGCTGCATACTATGGCAATTCTTCTTGTCTTAAGGCAATTCTTTCAACTGCTCAATCTAGTCCAGTAGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGAGATGGTAGGGGAGCAACACCTTTGCACTTGGCAGCACGTCAAAGACGGCCTGAATGTGTACATATCCTATTAGACAGTGGTGCTCTTGTTTGTGCTCCTACTGGAAGATATGGCTGTCCTGGGAGCACAGCTCTTCATCTAGCAGCTAGAGGGGGATCTCTGGATTGCATCCGTGCACTATTGGCTTGGGGTGCAGATCGTTTTCAACGTGATACATCTGGGAGAATGCCATATATAGTTGCATTGAAGCACAGACATGTTGCATGTGCAGCATTGTTAAATCCTACATCTGCAGAGCCTCTTGTCTGGCCATTATCTTTGAAAGTCATCAGTGAGCTTAATCCAGAAACAAAAGCTTTACTAGAGCATGCCTTGATGGAAGCTAACAGGGAAAGGGAGAAGAACATATTGAAGGGTAGTGCTTACTCTCTTCCATCTCCATTACACTCTGATGTGGTAGATGACAATATCTCTGAGGTTAGTGAGACAGAACTATGCTGCATCTGCTTTGAGCAAATATGCACAATTGAAGTCCAGGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCTCTCTGTTGCCATGGCAAGCCCAATCCTGCCACTGCTTCTCTTACTCCACCACTTTGTCCATTCTGCCGGAGTGCCATAGCTAGACTGGTGGTTATCAAGATAGAAGAAAATCATGAAGACATTGATCAAGATGGTCTTGATATCAATAGTTCCAAGATAAGCAAGTCAAGGAAATCGCGTAACTTAAATGAAGGTGCTAGCAGCAGCCTCAAGGGACTAACCACTGTCGGTTCATTCGGAAAGATAGGCGGTCGAAATTCTGGAAGGATTGCTTCTGAAAATGAGTGGGTTGATAATAAATAA 1341 0.44 MGQGLSCRGSHEHGLFHAVQHGDFETFATLLETHPSLMNHTTVYDRHSPLHIAAANGQIQILTRLLNGSVNPDVLNRQKQTPLMLAAMHGKIACVQKLLEAGANVLMFDSVYGRTCLHYAAYYGNSSCLKAILSTAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAPTGRYGCPGSTALHLAARGGSLDCIRALLAWGADRFQRDTSGRMPYIVALKHRHVACAALLNPTSAEPLVWPLSLKVISELNPETKALLEHALMEANREREKNILKGSAYSLPSPLHSDVVDDNISEVSETELCCICFEQICTIEVQDCGHQMCAQCTLALCCHGKPNPATASLTPPLCPFCRSAIARLVVIKIEENHEDIDQDGLDINSSKISKSRKSRNLNEGASSSLKGLTTVGSFGKIGGRNSGRIASENEWVDNK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0232 446 ProSiteProfiles Ankyrin repeat profile. 157 182 IPR002110 GO:0005515
Lal2g0232 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 389 IPR013083 -
Lal2g0232 446 SUPERFAMILY RING/U-box 319 373 - -
Lal2g0232 446 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Lal2g0232 446 SMART ANK_2a 45 74 IPR002110 GO:0005515
Lal2g0232 446 SMART ANK_2a 112 142 IPR002110 GO:0005515
Lal2g0232 446 SMART ANK_2a 227 256 IPR002110 GO:0005515
Lal2g0232 446 SMART ANK_2a 78 107 IPR002110 GO:0005515
Lal2g0232 446 SMART ANK_2a 10 39 IPR002110 GO:0005515
Lal2g0232 446 SMART ANK_2a 194 223 IPR002110 GO:0005515
Lal2g0232 446 SMART ANK_2a 157 186 IPR002110 GO:0005515
Lal2g0232 446 Gene3D - 146 295 IPR036770 -
Lal2g0232 446 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Lal2g0232 446 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 445 - -
Lal2g0232 446 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Lal2g0232 446 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Lal2g0232 446 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Lal2g0232 446 Gene3D - 9 144 IPR036770 -
Lal2g0232 446 SUPERFAMILY Ankyrin repeat 15 250 IPR036770 -
Lal2g0232 446 PANTHER HOMEOBOX PROTEIN WARIAI 1 445 - -
Lal2g0232 446 Pfam Ankyrin repeats (many copies) 195 235 IPR002110 GO:0005515
Lal2g0232 446 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Lal2g0232 446 Pfam Ankyrin repeats (3 copies) 112 182 IPR002110 GO:0005515
Lal2g0232 446 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Lal2g0232 446 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Lal2g0232 446 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0232 Lal-Chr2 1347818 1350789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0232 12 330 Miscellaneous Gene Families AT5G60070 27.778 2.24e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0232 - - gmx:100800611 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0232 2 1347818 1350789 Lal2g0232 2 1347818 1350789 ECH
Lal1g0328 1 1985636 1988498 Lal2g0232 2 1347818 1350789 LSH
Lal10g1262 10 18826074 18828818 Lal2g0232 2 1347818 1350789 PCT
Lal8g0106 8 753712 756621 Lal2g0232 2 1347818 1350789 PCT
Lal2g0232 2 1347818 1350789 Lal10g1262 10 18826074 18828818 PCT
Lal2g0232 2 1347818 1350789 Lal8g0106 8 753712 756621 PCT