Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0328 ATGGGTCAGGGTTTGAGTTGCAGAGGGAGCCATGAACATGGTCTCTTCCGTGCTGTTCAACATGGTGATTTAGAAACTTTTGCAACTCTTTTAGATACATGCCCTTCTCTCATGCACCGTACCACTGTCTATGATCGCCACTCTCCTCTTCATATTGCTGCTGCTAATGGCCAGATCCAGATTTTAACAAGGCTTTTAAATGGATCTGTGAATCCAGATGTTCTGAATCGCCAAAAACAGACTCCGCTTATGCTAGCAGCAATGCACGGAAAGATTGCTTGTGTGGAAAAGCTACTTGAAGCGGGTGCTAATGTATTAATGTTTGATTCAGTTTATGGAAGAACCTCATTGCATTATGCTGCATACTATGGGCATTCTTCTTGCCTTAAGGCAATTCTTTCAACTGCTCAATCTAGTTCTGTAGCTGCTTCTTGGTTAGTGCTTAATTTTAGCATCAATTTCTCCCCCAATCGATTCATGTTCATGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGTAAGGGAGCAACACCATTGCACTTGGCAGCACGTCAACGACGGCCTGAATGTGTACATATTCTATTAGACAGTGGAGCTCTTGTTTGTGCTCCTACTGGAAGATATGGCTGTCCTGGGAGCACAGCTCTTCATCTAGCGGCTAGAGGGGGATCTCTGGATTGCATCCGTCCATTGTTGGCTTGGGGTGCCGATCGTCTTCAACGTGATACATCTGGGTTAAATGCTCAGAAGTTATGGAATTGCTTTGAACTGAGGATACCATATATAGTTGCTCTGAAACACAAACATGGTGCATGTGCAGCATTGCTGAATCCTACATCTGCAGAGCCTCTTGTTTGGCCATTACCTTTGAAAGTCATCAGTGAACTTAATCCAGAAGCAAAAGCTTTATTAGAGCGTGCGCTGATAGACGCAAACAAGGAACGGGAGAAGAACATATTGAAGGGTACTGCTTACTCTCTTCCATCTCCATTACACTCTGATATGGTAGATGACAATATATCTGAGGTATGCACAATTGAAGTCCAGGACTGTGGTCACCAGATGTGTGCACAATGCACATTAGCCCTATGTTGCCACAACAAGCCAAACCCTGCCACTGCTTGTCTTACCCCTCCACTTTGTCCATTCTGCCGAAGCACCATAGCCAGACTTATGGTTATCAAGATGGAAGAAAGTCATGATGACATCGATCAAGATGTCGTTGATATCAATGGTTCCAAGATAAGCAAGTCATATAAATCGCGAAACTTAAACGAAGGTGATAGCAGCAGCTTCAAGGGACTAACCACGGTCAGTTCATTTGGAAAGATGGGTGGCCGAAGTTCTGGAAGGATTGCTTCTGAAAATGAGTGGGTTGATAATAAACAACAGTGA 1395 0.4394 MGQGLSCRGSHEHGLFRAVQHGDLETFATLLDTCPSLMHRTTVYDRHSPLHIAAANGQIQILTRLLNGSVNPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDSVYGRTSLHYAAYYGHSSCLKAILSTAQSSSVAASWLVLNFSINFSPNRFMFMGFARFVNIRDGKGATPLHLAARQRRPECVHILLDSGALVCAPTGRYGCPGSTALHLAARGGSLDCIRPLLAWGADRLQRDTSGLNAQKLWNCFELRIPYIVALKHKHGACAALLNPTSAEPLVWPLPLKVISELNPEAKALLERALIDANKEREKNILKGTAYSLPSPLHSDMVDDNISEVCTIEVQDCGHQMCAQCTLALCCHNKPNPATACLTPPLCPFCRSTIARLMVIKMEESHDDIDQDVVDINGSKISKSYKSRNLNEGDSSSFKGLTTVSSFGKMGGRSSGRIASENEWVDNKQQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0328 464 ProSiteProfiles Ankyrin repeat profile. 211 243 IPR002110 GO:0005515
Lal1g0328 464 MobiDBLite consensus disorder prediction 441 464 - -
Lal1g0328 464 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Lal1g0328 464 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Lal1g0328 464 Pfam Ankyrin repeats (3 copies) 117 237 IPR002110 GO:0005515
Lal1g0328 464 ProSiteProfiles Ankyrin repeat profile. 112 144 IPR002110 GO:0005515
Lal1g0328 464 PANTHER HOMEOBOX PROTEIN WARIAI 1 461 - -
Lal1g0328 464 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Lal1g0328 464 ProSiteProfiles Ankyrin repeat profile. 174 199 IPR002110 GO:0005515
Lal1g0328 464 SMART ANK_2a 112 143 IPR002110 GO:0005515
Lal1g0328 464 SMART ANK_2a 45 74 IPR002110 GO:0005515
Lal1g0328 464 SMART ANK_2a 174 203 IPR002110 GO:0005515
Lal1g0328 464 SMART ANK_2a 78 107 IPR002110 GO:0005515
Lal1g0328 464 SMART ANK_2a 10 39 IPR002110 GO:0005515
Lal1g0328 464 SMART ANK_2a 211 240 IPR002110 GO:0005515
Lal1g0328 464 ProSiteProfiles Ankyrin repeat region circular profile. 174 199 - -
Lal1g0328 464 SUPERFAMILY Ankyrin repeat 15 249 IPR036770 -
Lal1g0328 464 Gene3D - 9 145 IPR036770 -
Lal1g0328 464 ProSiteProfiles Ankyrin repeat region circular profile. 211 237 - -
Lal1g0328 464 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Lal1g0328 464 Gene3D - 162 366 IPR036770 -
Lal1g0328 464 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Lal1g0328 464 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0328 Lal-Chr1 1985636 1988498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0328 15 232 Miscellaneous Gene Families AT5G60070 23.789 1.34e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0328 - - gmx:100800611 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0328 1 1985636 1988498 Lal1g0328 1 1985636 1988498 ECH
Lal1g0328 1 1985636 1988498 Lal2g0232 2 1347818 1350789 LSH
Lal10g1262 10 18826074 18828818 Lal1g0328 1 1985636 1988498 PCT
Lal8g0106 8 753712 756621 Lal1g0328 1 1985636 1988498 PCT
Lal1g0328 1 1985636 1988498 Lal10g1262 10 18826074 18828818 PCT
Lal1g0328 1 1985636 1988498 Lal8g0106 8 753712 756621 PCT