Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1262 ATGGGTCAGTGCCTGAGTTGCAGTGTTAACCATAATGAACATGGTCTATTCACTGCGGTTCAACACGGTGATTTTCAAACAGTTACTACTCTTCTACAAGATGACCCTTCTCTCTTTCACCACACCACTCTCTATGATCGCCACTCTTCTCTTCATATTGCTGCTGCCAATGGCCAGATCCAGATTCTATCAAGTCTTTTACATGGATCTATTAATCCAGATGTTTTAAATCGCCAAAAGCAGACTCCGCTTATGTTGGCAGCAATGCACGGAAAAATCGATTGTGTGGAGAAGCTCCTTCAAGCTGGAGCTAATGTATTAATGTTTGATGCGATTTATGGAAGAACCTGTTTGCACTATGCTGCCTATTACGGCCATTCTTCTTGCCTTAAAGCAATTCTTTGGGCTGCTAAATCTAGTCCAGTGGCTGCTTCTTGGGGATTTACTCGGTTTGTGAATATTAGAGATGGAAAGGGTGCAACACCATTGCACTTGGCAGCTCATCAAAGACGGCCTGAATGTGTACATATTCTCTTAGATAGTGGTGCTCTTGTTTGTGCTTCTACTGGTGGATATGGTTGTCCTGGGAGCACTCCCCTTCATCTAGCAGCCAGAGGTGGATCCATGGATTGCATCCGTGAATTGTTGGCATGGGGTGCAGATCGTCTTTATCGCGATGCATCAGGGAGGATACCATATATTGTTGCTCTGAAACACAAACATGGAGCATGTGCATCATTGCTAAATCCAACATCTGCAGAGCCTCTTGTTTGGCCATCTCCATTGAAGTTTATCAGCGAGCTTAACGCAGAAGCCAAAGCTTTATTAGAACAGGCTTTGATGGACTCTAACAAGGAAAGGGAGAAAAACATGTTGAAGGGGAGTGCTTACATTCCATCTTCTTCACATTCTGATGTGGTAAATGACGATATCTCTGAGGTTAGTGAATCAGAAATATGTTGCATATGCTTTGAGCAGATATGCACAATTGAAGTCCAGAACTGTGGCCACCAAATGTGTGCACAATGCACACTAGCCCTTTGTTGTCACAACAAGCCTAATCCAACAACCGCTTCTCTTACACCACCGGTGTGTCCATTTTGTCGAAGTGTTATAGCTAGACTAGTCGTTGTAAAAATAGAAAATCATCATGATACTGAAGCTGATGAAGATATTGTTGATATGAACTGTTCCAAGCTAAGTAAGTCAAATAAATCAAGAAACTTGAACGATGGAGATAGCAGTAGCTTCAAGGGAATATCATTTGGAAAATTGGGCTGCCATAACTCTGGAAGAATTGCTTCTGAAAATGAGTGGGTTGATAAACAGTGA 1332 0.4242 MGQCLSCSVNHNEHGLFTAVQHGDFQTVTTLLQDDPSLFHHTTLYDRHSSLHIAAANGQIQILSSLLHGSINPDVLNRQKQTPLMLAAMHGKIDCVEKLLQAGANVLMFDAIYGRTCLHYAAYYGHSSCLKAILWAAKSSPVAASWGFTRFVNIRDGKGATPLHLAAHQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSMDCIRELLAWGADRLYRDASGRIPYIVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNAEAKALLEQALMDSNKEREKNMLKGSAYIPSSSHSDVVNDDISEVSESEICCICFEQICTIEVQNCGHQMCAQCTLALCCHNKPNPTTASLTPPVCPFCRSVIARLVVVKIENHHDTEADEDIVDMNCSKLSKSNKSRNLNDGDSSSFKGISFGKLGCHNSGRIASENEWVDKQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1262 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 388 IPR013083 -
Lal10g1262 443 SUPERFAMILY Ankyrin repeat 13 251 IPR036770 -
Lal10g1262 443 Pfam Ankyrin repeats (3 copies) 113 184 IPR002110 GO:0005515
Lal10g1262 443 Pfam Ankyrin repeats (3 copies) 16 110 IPR002110 GO:0005515
Lal10g1262 443 Pfam Ankyrin repeats (many copies) 196 236 IPR002110 GO:0005515
Lal10g1262 443 Gene3D - 10 146 IPR036770 -
Lal10g1262 443 ProSiteProfiles Ankyrin repeat region circular profile. 158 183 - -
Lal10g1262 443 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Lal10g1262 443 ProSiteProfiles Ankyrin repeat region circular profile. 195 221 - -
Lal10g1262 443 ProSiteProfiles Ankyrin repeat region circular profile. 79 106 - -
Lal10g1262 443 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
Lal10g1262 443 SUPERFAMILY RING/U-box 319 374 - -
Lal10g1262 443 SMART ANK_2a 113 143 IPR002110 GO:0005515
Lal10g1262 443 SMART ANK_2a 11 40 IPR002110 GO:0005515
Lal10g1262 443 SMART ANK_2a 79 108 IPR002110 GO:0005515
Lal10g1262 443 SMART ANK_2a 195 224 IPR002110 GO:0005515
Lal10g1262 443 SMART ANK_2a 158 187 IPR002110 GO:0005515
Lal10g1262 443 SMART ANK_2a 46 75 IPR002110 GO:0005515
Lal10g1262 443 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Lal10g1262 443 Gene3D - 147 251 IPR036770 -
Lal10g1262 443 ProSiteProfiles Ankyrin repeat profile. 46 78 IPR002110 GO:0005515
Lal10g1262 443 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
Lal10g1262 443 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Lal10g1262 443 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1262 Lal-Chr10 18826074 18828818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1262 78 248 Miscellaneous Gene Families AT5G02620 26.866 4.00e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1262 - - gmx:100786708 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1262 10 18826074 18828818 Lal10g1262 10 18826074 18828818 ECH
Lal10g1262 10 18826074 18828818 Lal8g0106 8 753712 756621 LSH
Lal10g1262 10 18826074 18828818 Lal1g0328 1 1985636 1988498 PCT
Lal10g1262 10 18826074 18828818 Lal2g0232 2 1347818 1350789 PCT
Lal1g0328 1 1985636 1988498 Lal10g1262 10 18826074 18828818 PCT
Lal2g0232 2 1347818 1350789 Lal10g1262 10 18826074 18828818 PCT