Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1085 ATGGGTGAAGAGAAATTAGTTGAGGAAATGAGTAGAACAAGTAATGAGAATAAGGGAAAGAAAGGGATTATTTATAGAATTTGGAATGGAATATTTAGGTCAAAAAGAGATGATTTTGAGAAGAGATTGAAACATATTTCAAAAGAAGAAGGTGTTGTTATGGGTAGAATCAAAAAGAGGGATTTTTCTTGGAGGAAGACATCAAGGCAAATTATTGCATTTTCTGTTATATTTGAGGTCATTGCTGTAGGTTATGCTTTTATGACGACTAGAACAGTGGATATGAATTGGAAAATGAGGGCAATTCGGGTTTTACCGATGTTTCTTTTGCCTGCCTTATCCACTGCTGCTTATACAACATTTGTCAGCTTCATAGGGATGTGCGATCGCAGGGACCAGAAAATTCTTGACAAGCTTAGAGCTGAGAGGAAGGCAAAAATTAATGAGCTCAAAGAGAAGACAAATTATTACACTACTCAACAACTCATTCAGAAATATGACACAGACCCGGCAGCAAAGGCAGCTGCTGCATCTGTTCTGGCATCCAAGTTGGGTGCTGATTCAGGTTTGAAAGTGTACCTTGGCGATGAATCAAAGCCTGGTGCTCCAACAGGGAAGAGCAATGATGTCGAACTTGTGCAGTCTAACGGACTTCGAAATCGTAATAAAGTGCAGTCTAGATCCGTTAGTCCCGGAATGACTACCCCAAATCTTTCTGATAAACAATTAGTTGGCTCTGGGGGAATTGATCAAACTCAGACCTCTGATCATAATCAACTTGTAGTTGTTGAACATCACCAACCTCAAGGGTCAATAGCAAATGGCGGAGGATGGATTGCTCGAATTGCTTCATTGCTTGTGGGGGAGGACCCAACACTATCATATGCGCTCATCTGTGGTAACTGCCACGTGCATAATGGTCTATCTCGGAAGGAGGATTTCCCATTTACCACTTACTACTGCCCACATTGTCACGCCTTGAACAAACCAAAGCAATCGGACGAGCGAAGCATCTCTGGTCTTAATTCGCCGAATAAAGATGTCGGTGAGGTAGTTAAAAATGCTACTGCTTCTGCAGCTGACAGCATAATCAGAAGCATTAGTCCCATAAATGGTAGCCCTGAGGTTGAGAAAGTATCTGAAAGCACTAATTTGGTGGAGAATGCCAGTTAA 1173 0.4152 MGEEKLVEEMSRTSNENKGKKGIIYRIWNGIFRSKRDDFEKRLKHISKEEGVVMGRIKKRDFSWRKTSRQIIAFSVIFEVIAVGYAFMTTRTVDMNWKMRAIRVLPMFLLPALSTAAYTTFVSFIGMCDRRDQKILDKLRAERKAKINELKEKTNYYTTQQLIQKYDTDPAAKAAAASVLASKLGADSGLKVYLGDESKPGAPTGKSNDVELVQSNGLRNRNKVQSRSVSPGMTTPNLSDKQLVGSGGIDQTQTSDHNQLVVVEHHQPQGSIANGGGWIARIASLLVGEDPTLSYALICGNCHVHNGLSRKEDFPFTTYYCPHCHALNKPKQSDERSISGLNSPNKDVGEVVKNATASAADSIIRSISPINGSPEVEKVSESTNLVENAS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1085 390 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 9 385 - -
Lal25g1085 390 MobiDBLite consensus disorder prediction 369 390 - -
Lal25g1085 390 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 278 328 IPR019273 -
Lal25g1085 390 MobiDBLite consensus disorder prediction 223 251 - -
Lal25g1085 390 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 9 385 IPR040115 GO:0071786
Lal25g1085 390 Coils Coil 136 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1085 Lal-Chr25 14172540 14177834 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1085 K23292 - gmx:100815496 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1535 8 19666904 19676628 Lal25g1085 25 14172540 14177834 LSH
Lal25g1085 25 14172540 14177834 Lal17g0265 17 1653224 1656671 PCT
Lal25g1085 25 14172540 14177834 Lal4g0248 4 1604637 1608006 PCT
Lal17g0265 17 1653224 1656671 Lal25g1085 25 14172540 14177834 PCT
Lal4g0248 4 1604637 1608006 Lal25g1085 25 14172540 14177834 PCT