Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0265 ATGGTTGATGAAGATGAAAAGAAAGAGACAAGTCCTACAAATGAGAAAAAGAAGCACATGGGATTTTTTTCTAGAATTTGGAATGTGTTTAGATTACAAGGTGATGATTTTGAGAAGAGGCTCCAATACATTTCTAAAGAAGAAGCTGCAGTTATCTCTAGAATGACCAGAAGATCCAGATCCCGGAGGCGAATTTCCCGGCAACTTACTATATTTTCTGTTACATTTGAGGTCATTGCTGTAGGTTATGCTATAATGGCAACAAGAACAATGGATATGGATTGGAAAATGAGGGCAATTCGGGTTTTGCCAATGTTTCTTTTGCCTGCATTCACTTTTGCTGCATATTCAATATCTGTCAGCTTCACAAGGATGTGTGATCGCAGGGACCAAAAAATTCTTGAGAGGCTTCGCTCTGAAAAGCAGGCAAAAATTGATGAGCTCAAAGAAAAGACAAATTATTACATTACACAACAGCTCATTCAGAGATATGACCCAGACCCAGCCGCAAAGGCAGCTGCTGCAACTGTTTTGGCATCTAAGTTGGGTGCAGATTCAGGTTTGAAAGTGTATGTGGGAGATGATTCTAATTTGGGCGCCGCAATGGCAACAAGGAATGATGTTGAACTTATGCAGTCCACTGGACTTCGGAATCGGAAACAAGTTCAACCTAGATCCACTAGTTCGGGGACAAGTACACCAAATTATTCTGATCAACAGTTAGTTGGTTCCGGGGAAACTGACCAAACTAGTATATCTGATCATAATCAGCTTGTAGTTGTTGAACACCACCAACCTAAAAGTTCAACCACTCAAGATGGGGGATGGGTGGCACGACTGGCAGCATTGCTTGTGGGTGAGGATCCAACACAGTCTTATGCTCTCATATGCGGCAACTGCCATATGCATAATGGTCTAGCTAGGAAGGTGGATTTCCCTTTTGTTACTTACTACTGCCCTCACTGTCATGCCCTGAACAAACCAAAACAATCAGGTGATCATATCTCTGATCATTCTTCCCCGAACATTGGGTCTCCTCCAAAAACAGACGCTGGTCATGCGGTTAAAGATGCTATCACTTCTGTGGTTGAGAGCATAATCACAAGCAAGAATAACCCTGAGATTGAGGAAGTATTAGAAGGGACGAGTTTGGAGGAGAAAGCTAGTTAA 1170 0.4222 MVDEDEKKETSPTNEKKKHMGFFSRIWNVFRLQGDDFEKRLQYISKEEAAVISRMTRRSRSRRRISRQLTIFSVTFEVIAVGYAIMATRTMDMDWKMRAIRVLPMFLLPAFTFAAYSISVSFTRMCDRRDQKILERLRSEKQAKIDELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYVGDDSNLGAAMATRNDVELMQSTGLRNRKQVQPRSTSSGTSTPNYSDQQLVGSGETDQTSISDHNQLVVVEHHQPKSSTTQDGGWVARLAALLVGEDPTQSYALICGNCHMHNGLARKVDFPFVTYYCPHCHALNKPKQSGDHISDHSSPNIGSPPKTDAGHAVKDAITSVVESIITSKNNPEIEEVLEGTSLEEKAS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0265 389 MobiDBLite consensus disorder prediction 212 252 - -
Lal17g0265 389 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 7 377 - -
Lal17g0265 389 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 7 377 IPR040115 GO:0071786
Lal17g0265 389 MobiDBLite consensus disorder prediction 329 353 - -
Lal17g0265 389 Coils Coil 131 154 - -
Lal17g0265 389 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 276 326 IPR019273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0265 Lal-Chr17 1653224 1656671 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0265 K23292 - gmx:100797087 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0265 17 1653224 1656671 Lal4g0248 4 1604637 1608006 LSH
Lal8g1535 8 19666904 19676628 Lal17g0265 17 1653224 1656671 PCT
Lal25g1085 25 14172540 14177834 Lal17g0265 17 1653224 1656671 PCT
Lal17g0265 17 1653224 1656671 Lal8g1535 8 19666904 19676628 PCT
Lal17g0265 17 1653224 1656671 Lal25g1085 25 14172540 14177834 PCT