Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0329 ATGGCTTCAGTTTCTTCAATCAAATTCTTTCTGTGCTTAGTTCTATGGCTCTTCAACTTTCTACCTCTTTCTCAAGGTAAAGAAAACTCAAATGAATATCACTATCCATTTATAAAAAAAGCAAGCACATTCTCATCATCACCATCAGTTTCAAGAACAACAAAAAATAATGGCTATGATTACATAATATTAGGAGGTGGAACATCAGGGTGTCCATTGGCTGCAACACTGTCACAGAATTTCAGGGTTTTGTTGCTTGAAAGAGGAGGAATCCCTTTCACTAATCCCAATGTGTCACTTTTAGATAATTTCCACATTAACTTGGCAGACACTTCACCTACTTCAGCTTCTCAATATTTCATATCAACTGATGGAGTCATGAATGCAAGGGCAAGGATTTTGGGTGGTGCCACTTCCATCAATGCTGGCTTCTATACTAGAGCTAGCACAAGATACATAGAAAAAGTAGGATGGGATGCAAAGGTAGTAAATGAATCATATCAATGGGTTGAGAAGCAGATTGTTTATCGTCCAAAGTTTTCAGGTTGGCAGAGAGCAGCAACGGATAGTCTTGTAGATGTTGGTGTGTCACCTTTTAATGGGTTCACTTATGATCATAAATATGGCACCAAACTTGGTGGAACCATTTTTGACACATTTGGTCACCGCCACACAGCTGCTGAACTTCTTGCACATGCAAACCCTCACAAACTTACTGTTTTGATCCATGCAACTGTTCAAAGGATTGTTTTTTATACAACTGGAAAAAGACCAAAAGCAGTGGGGGTTATTTTCAAGGATGAAAATGGGAAACAACATAAGGCAATGTTGGGAAGTGATAAAGAGAGTGAAGTGATTGTGTCTAGTGGGGCAATTGGGACTCCTCAAATGCTATTGCTTAGTGGAATTGGCCCAAAAACAGAACTTAAGAAATTGAACATTTCTGTGGTACTTGACAACAAATTTGTTGGTAAGGGTATGGCTGATAACCCCATGAACACAATTTTTGTTCCTTCTAAGAGACCAATTCAACAAACACTTATAGAAACTGTTGGTATTACCAAATTGGGTGTCTACATTGAGACTAGTTCTGGGTTTGGTCAGTCCAACAACAGCATTCACTGCCACCATGGTCTCTTATCAGCTGAGATTGGGCAGCTATCAACAATTCCTCCGAAACAAAGATCACATGAAGCTGTTGAAGCTTTCATCAAGAACAAGAAAGACATACCAATAGAAGCATTTAGGGGAGGATTCATCTTATCAAAAGTTGCAAATCCTTGGTCAAGTGGTGAGCTTAAATTGATGAACACCAATGTTGATGACAACCCTATTGTTACATTCAACTACTTCAATCATCCATATGATGTTCAACGTTGTGTTGAAGGTATACGTTTAGCTACTAAGGTTGTTCAGTCACAACACTTCACAAACTACACTATGTGTGATACACAAACTACACAGGAACTTCTTAACCTTACTGTGAAGGCTAATGTTAACTTCATACCTAAGCATCTCAATGATACACAATCACTAGAGCAGTTTTGTAGAGACACTGTGATCACAATTTGGCACTACCATGGTGGTTGCCATGTTGGGAAGGTAATCAACTCAAACTATAAGGTTATTGGTGTTGATAGACTCAGTGTGGTAGATGGTTCAACATTTACTGAGTCACCAGGAACTAATCCTCAAGCTACTGTCATGATGCTCGGCAGGTACATGGGACTGAAGATTTTAAGACATAGGTTAGGGAAACTGGCTGGTGTATAA 1773 0.3909 MASVSSIKFFLCLVLWLFNFLPLSQGKENSNEYHYPFIKKASTFSSSPSVSRTTKNNGYDYIILGGGTSGCPLAATLSQNFRVLLLERGGIPFTNPNVSLLDNFHINLADTSPTSASQYFISTDGVMNARARILGGATSINAGFYTRASTRYIEKVGWDAKVVNESYQWVEKQIVYRPKFSGWQRAATDSLVDVGVSPFNGFTYDHKYGTKLGGTIFDTFGHRHTAAELLAHANPHKLTVLIHATVQRIVFYTTGKRPKAVGVIFKDENGKQHKAMLGSDKESEVIVSSGAIGTPQMLLLSGIGPKTELKKLNISVVLDNKFVGKGMADNPMNTIFVPSKRPIQQTLIETVGITKLGVYIETSSGFGQSNNSIHCHHGLLSAEIGQLSTIPPKQRSHEAVEAFIKNKKDIPIEAFRGGFILSKVANPWSSGELKLMNTNVDDNPIVTFNYFNHPYDVQRCVEGIRLATKVVQSQHFTNYTMCDTQTTQELLNLTVKANVNFIPKHLNDTQSLEQFCRDTVITIWHYHGGCHVGKVINSNYKVIGVDRLSVVDGSTFTESPGTNPQATVMMLGRYMGLKILRHRLGKLAGV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0329 590 PIRSF Alcohol_oxidase 37 588 IPR012132 GO:0050660
Lal25g0329 590 SUPERFAMILY FAD/NAD(P)-binding domain 56 581 IPR036188 -
Lal25g0329 590 Pfam GMC oxidoreductase 59 331 IPR000172 GO:0016614|GO:0050660
Lal25g0329 590 Pfam GMC oxidoreductase 427 573 IPR007867 GO:0016614
Lal25g0329 590 ProSitePatterns GMC oxidoreductases signature 2. 290 304 IPR000172 GO:0016614|GO:0050660
Lal25g0329 590 PANTHER OSJNBA0019K04.7 PROTEIN 2 590 - -
Lal25g0329 590 Gene3D - 59 572 IPR036188 -
Lal25g0329 590 Gene3D - 176 522 - -
Lal25g0329 590 SUPERFAMILY FAD-linked reductases, C-terminal domain 327 529 - -
Lal25g0329 590 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0329 Lal-Chr25 2247623 2252258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0329 34 583 Miscellaneous Gene Families AT5G51950 50.811 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0329 K15403 - gmx:100779461 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0329 25 2247623 2252258 Lal10g1098 10 17843869 17850652 LSH
Lal25g0329 25 2247623 2252258 Lal20g1091 20 15057118 15065619 PCT
Lal25g0329 25 2247623 2252258 Lal18g0146 18 1153850 1162738 PCT
Lal20g1091 20 15057118 15065619 Lal25g0329 25 2247623 2252258 PCT
Lal18g0146 18 1153850 1162738 Lal25g0329 25 2247623 2252258 PCT