Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1098 AATGAAAACTCAAATGAATATCACTATCCATTTATAAAAAAGGCAAGCACATTCTCATCTTCAGCATCATTTTCAACAACCACAACCAAAAATGGATATGACTACATAATAGTGGGAGGTGGCACAGCAGGGTGCCCATTGGCTGCAACCCTTTCTCAGAATTTCAGTGTTCTTCTTCTTGAAAGAGGAGGAATACCTTTCACTAACCCTAATGTGTCCTTTCTAGAGAACTTCCACATTACCTTGGCTGATACTTCACCTACTTCAGCTTCACAATACTTTATCTCAACTGATGGAGTCCTCAATGCAAGAGCAAGGATTTTGGGTGGTGGCACTTCCATTAATGCTGGCTTCTACACTAGAGCAAGTACAAGATATATAGAGAATGTTGGATGGGATGCAAAGCTAGTAAATGAGTCTTATCCATGGGTTGAAAAGCAGATTGTTCATCGTCCAAAGTTTTCAGCTTGGCAGAGAGCAGCAAGGGATAGCCTTCTAGATGCTGGTGTGTCACCATTTAATGGCTTCACTTATGATCATAAATATGGTACCAAGGTTGGTGGAACCATTTTTGACAGATTTGGACGCCGCCACACTTCTGCTGAACTTCTTGCTCATGGAAACCCTGACAAACTTACTGTTTTGATTCATGCCACTGTCCAAAAGATTGTTTTTGATACAACAGGAAAAAGACCAAAAGCTATGGGGGTTATTTTCAAGGATGAAAATGGGAAACAACATCAGGCAATGCTAGGCAGTGATAGGCAGAGTGAAGTGATTGTGTCAAGTGGGGCAATTGGGAGTCCTCAATTGCTATTGTTAAGTGGAATTGGCCCAAAACCAGAACTTGAGAACTTGAACATCTCTGTGGTGCATGACAACAAATTTATTGGCAAAGGCATGGCTGATAACCCCATGAACACAATTTTTGTTCCTTCTAAGAGACCAATTCAGCAGTCACTCATAGAAACTGTTGGTATCACCAAATTGGGTGTCTACATTGAGACTAGCTGTGGGTTTGGCCAGTCTAACAATAGCATTCACTGCCACCATGGTCTCTTGTCAGCTGAGATTGGGCAGCTTTCAACAATTCCTCCCAAACAAAGATCAAGAGAAGCTGTTGAAGCTTTCATAAAGAACAAGAAAGACATACCAATTGAAGCATTCAGAGGAGGCTTCATCTTATCAAAAGTTGCAAATCCTTGGTCAACAGGTGAGCTTAAATTGATAAACACCAATGTGGATGACAACCCTGCTGTTACCTTCAACTACTTCAATCATCCATATGATGTTCAACGCTGTGTTGAAGGGATACGCTTAGCTACTAAGGTTGTTCAGTCACAACACTTCACAAACTACACTATGTGTGATAGACAAACTACAGAGGAATTGCTTAACCTCACTGTTAAGGCTAATGTTAACCTCATACCTAAGCATCTCAATGACACAAAGTCACTAGAGCAGTTTTGTAGAGACACTGTCATTACAATTTGGCACTACCATGGTGGATGCCATGTTGGGAAAGTAATCAACTCTGACTACAAGGTTCTCGGTGTTGATAGACTCAGTGTGATAGATGGCTCAACGTTTACTGAGTCACCAGGAACTAATCCTCAAGCTACTGTCATGATGCTGGGAAGGTACATGGGACTGAAGATTTTAAGAGAGAGGTTGGGAAAATTGGCTGGTATATAA 1695 0.4124 NENSNEYHYPFIKKASTFSSSASFSTTTTKNGYDYIIVGGGTAGCPLAATLSQNFSVLLLERGGIPFTNPNVSFLENFHITLADTSPTSASQYFISTDGVLNARARILGGGTSINAGFYTRASTRYIENVGWDAKLVNESYPWVEKQIVHRPKFSAWQRAARDSLLDAGVSPFNGFTYDHKYGTKVGGTIFDRFGRRHTSAELLAHGNPDKLTVLIHATVQKIVFDTTGKRPKAMGVIFKDENGKQHQAMLGSDRQSEVIVSSGAIGSPQLLLLSGIGPKPELENLNISVVHDNKFIGKGMADNPMNTIFVPSKRPIQQSLIETVGITKLGVYIETSCGFGQSNNSIHCHHGLLSAEIGQLSTIPPKQRSREAVEAFIKNKKDIPIEAFRGGFILSKVANPWSTGELKLINTNVDDNPAVTFNYFNHPYDVQRCVEGIRLATKVVQSQHFTNYTMCDRQTTEELLNLTVKANVNLIPKHLNDTKSLEQFCRDTVITIWHYHGGCHVGKVINSDYKVLGVDRLSVIDGSTFTESPGTNPQATVMMLGRYMGLKILRERLGKLAGI 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1098 564 Pfam GMC oxidoreductase 33 305 IPR000172 GO:0016614|GO:0050660
Lal10g1098 564 Pfam GMC oxidoreductase 401 547 IPR007867 GO:0016614
Lal10g1098 564 Gene3D - 33 546 IPR036188 -
Lal10g1098 564 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 7 564 - -
Lal10g1098 564 SUPERFAMILY FAD/NAD(P)-binding domain 25 556 IPR036188 -
Lal10g1098 564 Gene3D - 150 496 - -
Lal10g1098 564 PANTHER OSJNBA0019K04.7 PROTEIN 7 564 - -
Lal10g1098 564 PIRSF Alcohol_oxidase 11 563 IPR012132 GO:0050660
Lal10g1098 564 ProSitePatterns GMC oxidoreductases signature 2. 264 278 IPR000172 GO:0016614|GO:0050660
Lal10g1098 564 ProSitePatterns GMC oxidoreductases signature 1. 105 128 IPR000172 GO:0016614|GO:0050660
Lal10g1098 564 SUPERFAMILY FAD-linked reductases, C-terminal domain 301 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1098 Lal-Chr10 17843869 17850652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1098 8 557 Miscellaneous Gene Families AT5G51950 51.712 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1098 K15403 - gmx:100784433 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0329 25 2247623 2252258 Lal10g1098 10 17843869 17850652 LSH
Lal10g1098 10 17843869 17850652 Lal20g1091 20 15057118 15065619 PCT
Lal10g1098 10 17843869 17850652 Lal18g0146 18 1153850 1162738 PCT
Lal20g1091 20 15057118 15065619 Lal10g1098 10 17843869 17850652 PCT
Lal18g0146 18 1153850 1162738 Lal10g1098 10 17843869 17850652 PCT