Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0146 ATGGCTTCAGTTGCTGCACTCAAATTCTTCTTGTACTTAGTTTTATGGCTCTGCAACTTTCTACCTCCATGTCAAGGTAAGCAAAACAAGTATGAAAGTAAGTACCCATTTATAAAAAATGCTAGCTTATTCCAAATTCCACCATCAATATCAACTACTACCAACACAAAAAATGCATATGATTATATAATAGTAGGAGGTGGAACTGCAGGGTGCCCTTTAGCTGCAACACTTTCTAAGAATTTCAGTGTCCTATTACTTGAAAGAGGGGGTGTTCCTTTCACAAATTCCAATGTCACATTCCTAAGGAACTTTCACATTTCCTTAGCAGATACTTCACCAACTTCAGCTTCTCAATATTTCTGTTCAACTGATGGAGTTCACAATGCAAGGGCAAGGATTTTAGGTGGTGGTAGTTCTATCAATGCTGGATTCTATACTAGAGCAAGTCAAAGGTTTATAGAGAAAGCAGGGTGGGATACCAATGTAGTAAATGAGTCATACCAATGGATTGAGAAGAGAATTGTTCACCATCCAAAGTTTTCACCATATCAAGATGCAGTGAAGGAAAGCCTTCTAGATTCTGGGGTGTCTCCATTCAATGGATTCACCTATGATCATATGTATGGAACCAAAGTTGGTGGAACTATTTTCGACAAGTTCGGCCGCCGCCACACAACCGCCGAACTCCTTGCTTCAGGCAACCCTGACAAACTTACTGTTTTGGTCTATGCCACTGTCCAAAAGATAGTTTTTGATCATAAAGGAGAAAAACCAAAAGCTGTTGGGGTTATTTTCAAGGATGAAAATGGTAGACAACATGAAGCAATATTGGGAAATGATAGGCATAGTGAAGTGATAGTTTCTAGTGGTGCAATTGGGACTCCTCAATTGCTAATGCTTAGTGGAATTGGGCCAAAAGCTGAACTCCAAAACATGAACATAACAGTGGTTCATGACAATCCATTTGTTGGGAAGGGAATGGTAGATAACCCCATGAACACAGTTTTTGTGCCTTTTAATAGGCCAGTTAATCAATCATTGATACAAACAGTGGGTATTACCAAGTTAGGTGTGTACATTGAAGCTAGCAGTGGGTTTAGCCAATCCAATGATAGCATTCACTGCCACCATGGTATGTTATCAGCTGAGATTGGACAGCTCTCGACAATCCCTCCAAAGCAAAGATCGAAAGAAGCAATTCAAGCGTTTCGGGATAACAAGCGCGACATACCGATTGAAGCATTCAGGGGAGGCTTTATTTTGTCAAAAGTTGCAAGTACTTGGTCAGCAGGCAAACTCAGGCTGAACAACACCAATGTAGAGGACAATCCTATTGTTACCTTCAACTACTTCAGCCACCCTTACGATCTTCAGCGATGTGTCGAAGGTATTCGCCTTGCAACTAAGGTTGTTCAGTCACAACATTTCACAAACTACACTTTGTCTGACAGAAAAACCATAGAGAAACTACTTAACCTCAGTGTGAAGGCTAATGTCAACCTCATACCTAAGCATCCCAATGACACAGAATCGCTCGAGCAATTCTGTAAGGACACCGTGATCACGATTTGGCATTACCATGGTGGGTGTCATGTAGGGAAGGTAGTCAGCAATGATTATATGGTTCTTGGTGTCGATAAACTCCGTGTTGTGGATGGATCAACATTTACCGAGTCACCCGGAACCAATCCTCAAGCAACTGTGATGATGATGGGAAGGTACATGGGACTGAAGATTTTGAGAGAAACATTGGGAAAATTGGATGGTGTATAA 1776 0.4116 MASVAALKFFLYLVLWLCNFLPPCQGKQNKYESKYPFIKNASLFQIPPSISTTTNTKNAYDYIIVGGGTAGCPLAATLSKNFSVLLLERGGVPFTNSNVTFLRNFHISLADTSPTSASQYFCSTDGVHNARARILGGGSSINAGFYTRASQRFIEKAGWDTNVVNESYQWIEKRIVHHPKFSPYQDAVKESLLDSGVSPFNGFTYDHMYGTKVGGTIFDKFGRRHTTAELLASGNPDKLTVLVYATVQKIVFDHKGEKPKAVGVIFKDENGRQHEAILGNDRHSEVIVSSGAIGTPQLLMLSGIGPKAELQNMNITVVHDNPFVGKGMVDNPMNTVFVPFNRPVNQSLIQTVGITKLGVYIEASSGFSQSNDSIHCHHGMLSAEIGQLSTIPPKQRSKEAIQAFRDNKRDIPIEAFRGGFILSKVASTWSAGKLRLNNTNVEDNPIVTFNYFSHPYDLQRCVEGIRLATKVVQSQHFTNYTLSDRKTIEKLLNLSVKANVNLIPKHPNDTESLEQFCKDTVITIWHYHGGCHVGKVVSNDYMVLGVDKLRVVDGSTFTESPGTNPQATVMMMGRYMGLKILRETLGKLDGV 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0146 591 Gene3D - 60 573 IPR036188 -
Lal18g0146 591 PIRSF Alcohol_oxidase 36 589 IPR012132 GO:0050660
Lal18g0146 591 PANTHER OSJNBA0019K04.7 PROTEIN 2 591 - -
Lal18g0146 591 SUPERFAMILY FAD/NAD(P)-binding domain 56 583 IPR036188 -
Lal18g0146 591 ProSitePatterns GMC oxidoreductases signature 2. 291 305 IPR000172 GO:0016614|GO:0050660
Lal18g0146 591 ProSitePatterns GMC oxidoreductases signature 1. 132 155 IPR000172 GO:0016614|GO:0050660
Lal18g0146 591 Pfam GMC oxidoreductase 430 574 IPR007867 GO:0016614
Lal18g0146 591 SUPERFAMILY FAD-linked reductases, C-terminal domain 328 530 - -
Lal18g0146 591 Gene3D - 177 523 - -
Lal18g0146 591 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 591 - -
Lal18g0146 591 Pfam GMC oxidoreductase 60 332 IPR000172 GO:0016614|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0146 Lal-Chr18 1153850 1162738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0146 14 583 Miscellaneous Gene Families AT5G51950 49.658 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0146 K15403 - gmx:100788704 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1091 20 15057118 15065619 Lal18g0146 18 1153850 1162738 LSH
Lal25g0329 25 2247623 2252258 Lal18g0146 18 1153850 1162738 PCT
Lal10g1098 10 17843869 17850652 Lal18g0146 18 1153850 1162738 PCT
Lal18g0146 18 1153850 1162738 Lal25g0329 25 2247623 2252258 PCT
Lal18g0146 18 1153850 1162738 Lal10g1098 10 17843869 17850652 PCT