Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1091 ATGGCTTCAGTTGGTGCACTCAAATTCTTGTTGTGGTTAGTTCTATGGCACTGGAACTTTCTACCTCTATCTCAAGGTAAGGAGAAATACAGGTATGAAGATGAATATCCATTTATAAGAAATTCAAGCACATTCCAATCTCCACCATCAATTTCAACAACCTCAACCAACAATGCTTATGATTACATAATAGTTGGGGGTGGAACTTCTGGGTGCCCTTTGGCTGCAACACTTTCTCAAAATTTCAGTGTTCTATTACTTGAAAGAGGTGGTGTTCCTTTCACTAACTCCAATGTCACATTCCTAAGAAACTTTCACATTTCCTTAGCAGATACTTCACCAACTTCAGCTTCTCAGTATTTCTGTTCAACTGATGGAGTTCATAATGCAAGGGCAAGGATTTTGGGTGGTGGAAGTTCTATCAATGCTGGTTTCTATACTAGAGCAAGTACAAGGTTTATGGAAAAGGTTGGGTGGGATACCAAGCTTGTAAATCAGTCTTACACATGGGTTGAGAAGAGAATTGTTCACCGTCCAAAGCTTTCACCTTATCAAGCTGCAGTGAGGGATAGTCTTCTAGATTCTGGTGTCTCTCCTTTCAATGGATTCACCTATGATCATATCTATGGAACAAAAGTTGGTGGAACTATTTTTGACAGATTCGGCCGCCGCCACACAGCCGCCGAACTCCTCGCTTCCGGGAACCCCGACAAACTTACTGTTTTGGTCTACGCCACTGTCCAAAAGATCGTTTTCGACGATAAAGGAAAAATACCAAAAGCTATTGGTGTTATTTTCAAGGATGAAAATGGGAGACAACATGAGGCAATTCTGAGAAATGATAAGCATAGTGAAGTTATAGTATCTAGTGGAGCAATTGGGACACCTCAACTATTATTACTTAGTGGAATTGGTTCAAAAGAAGAACTCCAAAAATTGAACATAACATTGATTCTTGATAACCCAAATGTTGGTAAGGGAATGGTAGATAACCCTATGAACACAATTTTTGTGCCTTCTAATAGGCCAGTTACTCAGTCACTTATACAAACAGTGGGCATTACCAAGTTGGGTGTGTATATTGAAGCTAGCAGTGGGTTTAGTCAGTCCAATGATAGCATTCACTGCAACCATGGCATGTTGTCAGCTGAGATTGGACAGATCTCAACAATTCCTCCGAAACAAAGATCGAAAGAAGCTATTCAAGCTTTTGTAGAGAACAAGCGCGACATACCGATTGAAGCATTCAAGGGCGGATTTATCTTGTCGAAAGTTGCTAGTGCTTGGTCAGCAGGGAAGCTGAGGCTGAACAACACCAATGTGGAGGACAATCCTATTGTTACCTTCAACTACTTCAGTCACCGATACGATCTTCAGCGATGCGTCGAAGGTATTCGCCTTGCAACTAAGGTTGTCCAGTCACAACACTTCACAAACTATACCTTGTGTGACAAGAAAACAACAGAGAAACTGCTTAGCCTTAGTGTGAAGGCTAATGTAAACCTCATACCTAAGCATCCCAATGACACTAAGTCACTTGAGCAGTTCTGTAGGGACACTGTGATTACAATTTGGCACTACCATGGTGGCTGCCATGTGGGAAAGGTTGTCAGCAATGACTACAAGGTTCTCGGTGTCGATAGAATTCGCGTCGTAGATGGCTCGACATTTCCCGAGTCACCAGGAACCAATCCTCAAGCAACTGTGATGATGATGGGAAGGTACATGGGATTGAAGATTTTGAGAGAAAGATTAGGAAAATTGGCTGGTATATAA 1776 0.4172 MASVGALKFLLWLVLWHWNFLPLSQGKEKYRYEDEYPFIRNSSTFQSPPSISTTSTNNAYDYIIVGGGTSGCPLAATLSQNFSVLLLERGGVPFTNSNVTFLRNFHISLADTSPTSASQYFCSTDGVHNARARILGGGSSINAGFYTRASTRFMEKVGWDTKLVNQSYTWVEKRIVHRPKLSPYQAAVRDSLLDSGVSPFNGFTYDHIYGTKVGGTIFDRFGRRHTAAELLASGNPDKLTVLVYATVQKIVFDDKGKIPKAIGVIFKDENGRQHEAILRNDKHSEVIVSSGAIGTPQLLLLSGIGSKEELQKLNITLILDNPNVGKGMVDNPMNTIFVPSNRPVTQSLIQTVGITKLGVYIEASSGFSQSNDSIHCNHGMLSAEIGQISTIPPKQRSKEAIQAFVENKRDIPIEAFKGGFILSKVASAWSAGKLRLNNTNVEDNPIVTFNYFSHRYDLQRCVEGIRLATKVVQSQHFTNYTLCDKKTTEKLLSLSVKANVNLIPKHPNDTKSLEQFCRDTVITIWHYHGGCHVGKVVSNDYKVLGVDRIRVVDGSTFPESPGTNPQATVMMMGRYMGLKILRERLGKLAGI 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1091 591 PIRSF Alcohol_oxidase 38 590 IPR012132 GO:0050660
Lal20g1091 591 Gene3D - 177 523 - -
Lal20g1091 591 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 591 - -
Lal20g1091 591 PANTHER OSJNBA0019K04.7 PROTEIN 2 591 - -
Lal20g1091 591 ProSitePatterns GMC oxidoreductases signature 2. 291 305 IPR000172 GO:0016614|GO:0050660
Lal20g1091 591 SUPERFAMILY FAD-linked reductases, C-terminal domain 328 530 - -
Lal20g1091 591 Pfam GMC oxidoreductase 60 332 IPR000172 GO:0016614|GO:0050660
Lal20g1091 591 ProSitePatterns GMC oxidoreductases signature 1. 132 155 IPR000172 GO:0016614|GO:0050660
Lal20g1091 591 Pfam GMC oxidoreductase 430 574 IPR007867 GO:0016614
Lal20g1091 591 SUPERFAMILY FAD/NAD(P)-binding domain 55 583 IPR036188 -
Lal20g1091 591 Gene3D - 60 573 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1091 Lal-Chr20 15057118 15065619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1091 60 584 Miscellaneous Gene Families AT5G51950 52.919 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1091 K15403 - gmx:100779461 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1091 20 15057118 15065619 Lal20g1091 20 15057118 15065619 ECH
Lal20g1091 20 15057118 15065619 Lal18g0146 18 1153850 1162738 LSH
Lal25g0329 25 2247623 2252258 Lal20g1091 20 15057118 15065619 PCT
Lal10g1098 10 17843869 17850652 Lal20g1091 20 15057118 15065619 PCT
Lal20g1091 20 15057118 15065619 Lal25g0329 25 2247623 2252258 PCT
Lal20g1091 20 15057118 15065619 Lal10g1098 10 17843869 17850652 PCT