Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0471 ATGGTGGGATTTTCTACAACATCTGCTGAAACAATATCATTCCTTCAACAAAGCAAGGTTTCCCCATGGAAGATTAGATTTTTTGTCAAAGATCCTATGATTTTAACCACTTTCACCAACTACAAAAAGTTGTCAGTTGATTTCTTCTTAAACAAAAGCATGGTTGAAAATTTCATTGCTTCAACACCATTTGGAGTTTCATGTCAAAAAACTCATGTAGTAAACTTTCTTTCACAAATAAACATAATAAATGTTATTGTTAGCTGCGGTAATGGTGAGTACTTAGCACAAAATGAGATACAACCTTCACTTTTATCTGCTCTTAAAGCAGTCCATTCAGTTCTCAACAAGTTTCATGTAAGCAATGAAGTAAAAGTCTCAGTAGCATTTCCACTGTCATTCTTAGAGAAGTTAAATGCATCAAATGAAAGAGAACTTGTTAGGATTCTTTCATTCATAAAGGAAACAAAATCCTTTGTCTTGATAGAAGACAGCATTGATGGGGAATTAAGCATAGGGGAACACTTTATTCAGTCTATTATCAAAAGAGTCACCCTTGCTGCTTCTATTCTTCCTTCCAAAGATGTTCCTGTGGTTCTCACAATCAAGAGCAGAGTTATCTTAAGTTCAAAAGAAACAGCTCAATTTAGTGAAAGGGTATACAAATATCTAGAATCAAGAACTCAGGTCACAAAGAGAATAGTTGCATTATATGCTGAAGTAGACACAACAAAAGATTTTGCACAAAAGCAGCTCAAAATGGAAGAGTTAGAGTTATTTCCCCACATGAGAAGAATTCTATATGACACCACAACCAACCCACCAAACACAGTTTTCCCTACAAATCCTAAACCAGCTACTACACCAGTCACCATACCACCAGATACACCAACAATCATCACAGTCCCTTCTACAAATCCTGTAACAATTACCCCAACCAATCCAGCTGCAATGCCAGTAACAGTTCCTAACACCACACCTGTGCCCTTAACTCCCGGAACTCCAGCCAGTAATTCGCCCGTAGTACCGGTCAGCAATCCAGCTGCTACAACTCCAACAATAGTTCAAGGGGCAACACCACTGACACCAGTGCAACCAGTAACAAACCCTGTGGTATCTTATCCACCCCCATCAGCAAGTGTTCCTGTCATAGACCATCAACCACCTCCTACAAACACAAATGTTCCTCCTGCCACTCAGGGGCAGAGTTGGTGTGTGGCAAAGAGTGGAGCTCCACAAAGTTCTCTTCAATCAGCACTTGACTATGCTTGTGGAAATGGTGCAGATTGTTCTCAGGTACAGCAGGGCGGAAGTTGTTACAGTCCAGTTACTTTGCAGAACCATGCTTCTTATGCCTTCAACAGTTACTACCAAAAGCATCCAGCACCAACAAGCTGTGACTTTGGAGGGACTGCCACCTTAGTTAACACCAACCCAAGTTCAGGTTCTTGCATTTTCCCATCAACATCGACAACAACGCCAATTTCATCACCCCCAACAACAAATACACCATCAATTACAATACCACCACCAAGTCCTATAACTCCTCCATCATCAATTCCAACGACGCCACCAGCAACACCCACACAATCGATTCCAACAGCACCACAAACACCGCCCTCATCTTCAGGAACTGCCACTTTCGGCTATGGTACTCCACCTTCAGTGTTAAATTCAAGCAACCCAATATCAGGTACATTGTCAGGTTTCCCTCCTGCTGAAAATCCCACTTCATCAACCTCCCATTCAGTTGATCCTCTGAGACCTTATTTTAGCTCCATGGCTCTGGTGATATCATTTGTCACTGCAAGACTCACAATGCACCCATAG 1830 0.4148 MVGFSTTSAETISFLQQSKVSPWKIRFFVKDPMILTTFTNYKKLSVDFFLNKSMVENFIASTPFGVSCQKTHVVNFLSQINIINVIVSCGNGEYLAQNEIQPSLLSALKAVHSVLNKFHVSNEVKVSVAFPLSFLEKLNASNERELVRILSFIKETKSFVLIEDSIDGELSIGEHFIQSIIKRVTLAASILPSKDVPVVLTIKSRVILSSKETAQFSERVYKYLESRTQVTKRIVALYAEVDTTKDFAQKQLKMEELELFPHMRRILYDTTTNPPNTVFPTNPKPATTPVTIPPDTPTIITVPSTNPVTITPTNPAAMPVTVPNTTPVPLTPGTPASNSPVVPVSNPAATTPTIVQGATPLTPVQPVTNPVVSYPPPSASVPVIDHQPPPTNTNVPPATQGQSWCVAKSGAPQSSLQSALDYACGNGADCSQVQQGGSCYSPVTLQNHASYAFNSYYQKHPAPTSCDFGGTATLVNTNPSSGSCIFPSTSTTTPISSPPTTNTPSITIPPPSPITPPSSIPTTPPATPTQSIPTAPQTPPSSSGTATFGYGTPPSVLNSSNPISGTLSGFPPAENPTSSTSHSVDPLRPYFSSMALVISFVTARLTMHP 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0471 609 Gene3D - 398 495 - -
Lal24g0471 609 Pfam X8 domain 404 473 IPR012946 -
Lal24g0471 609 MobiDBLite consensus disorder prediction 485 583 - -
Lal24g0471 609 Gene3D Glycosidases 5 163 - -
Lal24g0471 609 MobiDBLite consensus disorder prediction 272 291 - -
Lal24g0471 609 MobiDBLite consensus disorder prediction 536 583 - -
Lal24g0471 609 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 129 574 IPR044965 GO:0004553|GO:0005975
Lal24g0471 609 MobiDBLite consensus disorder prediction 485 502 - -
Lal24g0471 609 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 129 574 - -
Lal24g0471 609 MobiDBLite consensus disorder prediction 503 535 - -
Lal24g0471 609 SMART X8_cls 403 486 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0471 Lal-Chr24 3318376 3325479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0471 389 488 Glycoside Hydrolase AT2G05790 51.961 1.17e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0471 - - gmx:100781884 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0471 24 3318376 3325479 Lal24g0471 24 3318376 3325479 ECH
Lal12g0564 12 4039672 4043042 Lal24g0471 24 3318376 3325479 LSH
Lal3g1423 3 20133072 20135644 Lal24g0471 24 3318376 3325479 PCT
Lal18g0386 18 3299487 3302628 Lal24g0471 24 3318376 3325479 PCT
Lal24g0471 24 3318376 3325479 Lal3g1423 3 20133072 20135644 PCT
Lal24g0471 24 3318376 3325479 Lal18g0386 18 3299487 3302628 PCT