Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0386 ATGAATCACAATATCACACTAATATTCCAGCCAGACCATTCTACATTCCAATATCACTCTTTTAAAATGGCCAAGGAAGCTTTTATGTGCCTCTTGTTCTTCTCTTTTCTCATAATCTGCTGTTCTGGTACTCCGGTAGATTTTTCTTATCATGAGAGAGATCACACTGCATATTCAACCTCTACTTTGACCACATTCAAATCTCAGATTCAGTTTTTGTGTTTTTTCTGTGCAAAATCTAACATTTTGTCCAAAAGAGAAAGCCTAAACAAAGTCCATATGAGAAGAATTCTAGATGAAACAACAAAAACCTCAGCTACCACATTTCCCCCTACAAATCCAACATCAACCACACCAATAACCACACTTCCAGATTCACCAGCCATCATAACAGTTCCATCCACCAATCCTGTCACAGTTTCACCTCCAAATCCATTTGCAATGCCTGGAACAGTTCCTTCTACACCACCACCCATTCCCTTAACCCCAACAAATCCAGCAAATTCTCAAGTACCTGTTACTAATCCAGGCACAGCTCCTATTACAGTTCCAGGGACACCACCAGCTACTACTACTAACAACCCACCTTCATTAGGAAACACAAATGCACCAACTAATACTCCTGGGCAGGGTTGGTGTGTGGCAAAGACTGGAGTTCCACAAACTACTCTTCAATCTGCACTTGACTATTGTTGTGGAATGGACAGTGCAGCTTGTTCACAGATACAGCAAGGTGGGAGTTGTTACAATCCAAATTCTTTACAAAACCATGCTTCTGTTGCCTTTAACAGTTATTACCAGAAGAATCAAGCACCAACAAGCTGTGACTTTGGAGGGGCTGCAACCTTAATTAACACCAATCCAAGCTCAGGATCCTGCATTTACACATCATCATCTGCATCATCAACAACAACATCTTCAGGAACAGGCATATCCGGCTCAGGTGCCCCAGCTTCAGTTGTTGGGTCCCAGAGCCCTCCACCTGATGCAGATTTCTCACATTCAGTTGGTTTGAGACCTTTTAATGGCTGCATGGTTCTGTTGATATCATTGGTCACTGGAAAACTCAGTATGAGGCAATAG 1083 0.422 MNHNITLIFQPDHSTFQYHSFKMAKEAFMCLLFFSFLIICCSGTPVDFSYHERDHTAYSTSTLTTFKSQIQFLCFFCAKSNILSKRESLNKVHMRRILDETTKTSATTFPPTNPTSTTPITTLPDSPAIITVPSTNPVTVSPPNPFAMPGTVPSTPPPIPLTPTNPANSQVPVTNPGTAPITVPGTPPATTTNNPPSLGNTNAPTNTPGQGWCVAKTGVPQTTLQSALDYCCGMDSAACSQIQQGGSCYNPNSLQNHASVAFNSYYQKNQAPTSCDFGGAATLINTNPSSGSCIYTSSSASSTTTSSGTGISGSGAPASVVGSQSPPPDADFSHSVGLRPFNGCMVLLISLVTGKLSMRQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0386 360 MobiDBLite consensus disorder prediction 148 165 - -
Lal18g0386 360 MobiDBLite consensus disorder prediction 104 126 - -
Lal18g0386 360 Pfam X8 domain 212 282 IPR012946 -
Lal18g0386 360 MobiDBLite consensus disorder prediction 306 329 - -
Lal18g0386 360 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 110 311 IPR044965 GO:0004553|GO:0005975
Lal18g0386 360 SMART X8_cls 211 295 IPR012946 -
Lal18g0386 360 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 110 311 - -
Lal18g0386 360 MobiDBLite consensus disorder prediction 148 171 - -
Lal18g0386 360 Gene3D - 208 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0386 Lal-Chr18 3299487 3302628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0386 163 295 Glycoside Hydrolase AT4G26830 42.963 1.07e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0386 - - aip:107645980 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0386 18 3299487 3302628 Lal18g0386 18 3299487 3302628 ECH
Lal3g1423 3 20133072 20135644 Lal18g0386 18 3299487 3302628 LSH
Lal18g0386 18 3299487 3302628 Lal12g0564 12 4039672 4043042 PCT
Lal18g0386 18 3299487 3302628 Lal24g0471 24 3318376 3325479 PCT
Lal12g0564 12 4039672 4043042 Lal18g0386 18 3299487 3302628 PCT
Lal24g0471 24 3318376 3325479 Lal18g0386 18 3299487 3302628 PCT