Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1640 ATGAAGCATTGGGTGTGTTTGTTTGTTATACTAGGGTTTGTTGTGCTGCTTCCTGTTTCAATGGCGAGATTCGTGGTGGAGAAGAACAGCTTGACCATAACATCACCGGAGAAAATCAAAGGAACATATGACAGTGCCATTGGAAACTTTGGAATACCTCAATATGGAGGTAGCATGGCTGGGAATGTGGTTTATCCTAAAGATAACAACAAAGGTTGTAAGGAATTCAATGACTTTGCCATTTCTTTCAAATCCACGCCTGGTGCTCTTCCCACTATCGTTTTACTCCATCGTGGAAGTTGTTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCAGATGATATTGATGAACCCTTAATAACCATGGACACACCTGAAGAGGATGGATCATCTGCGAAATACATAGAGAACATAACGATACCATCTGCTCTCATTGGAAAGAGTTTTGGTGAAAAATTAAAGGATGCCATAAGCGGTGGTGATATGGTCAATGTGAATCTTGATTGGAGAGAGGCTGTCCCACATCCTGATGAACGTGTGGAGTATGAGTTGTGGAGCAATAGTAATGATGAGTGTGGAGTTAAATGCAATATGTTGATGGAATTTGTAAAGGATTTCAAGGGTGCAGCGCAGATACTAGAGAAAGGTGGTTACACTCAGTTTACACCCCATTATATAACTTGGTACTGTCCTCAGGCATTCACATTAAGCAAACAGTGTAAATCTCAGTGCATAAATCACGGAAGATATTGTGCTCCAGATCCTGAGCAGGACTTCAGCACAGGTTATGATGGGAAAGATGTAGTTATTGAAAATTTAAGGCAGCTCTGTGTTTTCAAGGTGGCAAACGAAACCGCGACACCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGTCCAATGAAGGAGAAGAAGTACAACAAGGAATGCGCTGATACTGTCATTAAGTCACTGGGTCTCGACATTAAAAAGATTGAGAAGTGCATAGGAGATCCAGAAGCTGATTCTGAAAATCCTGTTTTGAAACAAGAGCAAGATGCCCAAATTGGGAAAGGATCACGAGGTGATGTTACAATATTGCCTACACTTGTTGTCAACAATCGACAATATCGAGGAAAATTGGAAAAAAGTGCTGTTCTAAAGGCTATTTGTGCTGGGTTTGAGGAAACTACTGAGCCAGCTGTTTGTTTGAGCGGTGATCTTCAGACAAATGAATGCTTGACGTCCAATGGTGGTTGTTGGCAGGATAAAGCATCTAACATCACCGCGTGCAAGGATACTTTTCGTGGGCGAGTATGTGAGTGCCCAATGGTTGATGGTGTGCAGTTCAAGGGAGATGGCTATACGACCTGTGAAGCTAGTGGACCTGGGCGTTGCAAGATAAACAATGGGGGTTGCTGGCATGATGCCCGGAATGGACATGCATTTTCTGCTTGTTCGGATGATGGAGGGGTTAAATGCCAGTGTCCTACAGGGTTTAGTGGCGATGGTGTCAAAAATTGTGAAGACATTGACGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATGATTGCACTTGCAGTGGGGATCTGCTGTATATAAAGGATCATGATGCTTGCATAGGTAAAACTGCTAGTCAGGGAAAATCTGCTTGGGCTGCATTTTGGGTCATTTTAATTGGCGTAGTTATGGCTGCTGGTGGGGCATTCCTTGTGTACAAATATAGAATAAGGCAATACATGGATTCGGAAATAAGAGCTATCATGGCACAATATATGCCATTGGACGGCCAAGTAGAAGTTCCAAATCACGTGAATGATCAAAGAACATGA 1881 0.4296 MKHWVCLFVILGFVVLLPVSMARFVVEKNSLTITSPEKIKGTYDSAIGNFGIPQYGGSMAGNVVYPKDNNKGCKEFNDFAISFKSTPGALPTIVLLHRGSCFFALKVWNAQKAGASAVLVADDIDEPLITMDTPEEDGSSAKYIENITIPSALIGKSFGEKLKDAISGGDMVNVNLDWREAVPHPDERVEYELWSNSNDECGVKCNMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETATPWVWWDYVTDFQIRCPMKEKKYNKECADTVIKSLGLDIKKIEKCIGDPEADSENPVLKQEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKSAVLKAICAGFEETTEPAVCLSGDLQTNECLTSNGGCWQDKASNITACKDTFRGRVCECPMVDGVQFKGDGYTTCEASGPGRCKINNGGCWHDARNGHAFSACSDDGGVKCQCPTGFSGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYDCTCSGDLLYIKDHDACIGKTASQGKSAWAAFWVILIGVVMAAGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDGQVEVPNHVNDQRT 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1640 626 SMART egfca_6 515 557 IPR001881 GO:0005509
Lal23g1640 626 Pfam PA domain 60 162 IPR003137 -
Lal23g1640 626 ProSitePatterns EGF-like domain signature 2. 499 513 IPR000742 -
Lal23g1640 626 CDD PA_VSR 49 176 - -
Lal23g1640 626 CDD EGF_CA 515 543 - -
Lal23g1640 626 Pfam Complement Clr-like EGF-like 498 518 IPR026823 -
Lal23g1640 626 SUPERFAMILY PA domain 30 169 IPR046450 -
Lal23g1640 626 Gene3D - 21 185 - -
Lal23g1640 626 Gene3D Laminin 408 464 - -
Lal23g1640 626 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 14 605 - -
Lal23g1640 626 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 14 605 - -
Lal23g1640 626 Gene3D Laminin 469 550 - -
Lal23g1640 626 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1640 Lal-Chr23 16147860 16152748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1640 22 625 Miscellaneous Gene Families AT2G14740 83.278 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1640 - - gmx:100820115 1188.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1640 23 16147860 16152748 Lal12g0381 12 2702565 2708090 PCT
Lal23g1640 23 16147860 16152748 Lal13g0370 13 2319552 2323820 PCT
Lal23g1640 23 16147860 16152748 Lal24g0291 24 2098314 2103913 PCT
Lal12g0381 12 2702565 2708090 Lal23g1640 23 16147860 16152748 PCT
Lal13g0370 13 2319552 2323820 Lal23g1640 23 16147860 16152748 PCT
Lal24g0291 24 2098314 2103913 Lal23g1640 23 16147860 16152748 PCT