Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1232 ATGTTGCTAGCTCCGGCGGATCCGTTGTTGACGCCGCCGCCGCCGCCGTTGAACTCTGACTCTGTTTCACTGAGATCGGAGAATCAGCGATTCGGTGATCTTAGAGGGTTAAAGTGGCGTATAAATCTTGGGGTCTTGCCATCTTCAACTTCCATTGATAATCTTCGCCGAGTCACTGCTGATTCTAGAAGGAGGTATGCCAGTTTAAGAAGGCGCCTCCTCATTGAACCACATATTCCGAGAAGTCGTTCAGCAGATCTTGTTATGGACAACCCGCTTTCGCAAAATCCAGATAGTACATGGAGTCGCTTTTTTCGCAGTGCGGAACTCGAGAGAATGGTTGATCAGGATTTATCACGTTTATACCCGGAGCATGGCAGTTATTTCCAGACACCAGGATGCCAAGGCATGTTGAGACGAATTCTATTACTTTGGTGTCTCAGGCACCCTGAATGTGGCTATAGACAAGGAATGCATGAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATCTCGGGCGTCTTTCCGAAGTTCAAAAGCTTTATGACGATCTCATCACAGACAGATTTGATGGGCTTTTATGTCAAGAGAATGATCTTTGTTACAGCTTTGATTTTCGAAAATCTAAAGACTCGGTGGAGGATGAAATTGGCTCCCATGGAAAGGCAACGAAAGTCAATAGTCTTGATGAGCTTGATCCTGAGATACAGACCATTGTATTGCTAAGTGATGCTTATGGAGCGGAAGGTGAACTCGGTATTGTTTTATCGGAGAAATTCATGGAACATGATGCGTACTGTATGTTTGATGCTTTAATGACCCATGGTTCAGTTGCAACGGCCGATTTCTTCTCCTCCTCTCCTTTAGCAGGGTCCCTTAGTGGCCTCCCTCCTGTTATTGACGCTTCTACTGCATTATATCATTTGTTGTCTCTTGTCGATTCATCTCTACATAGCCATCTTTTGGATCTTGGGGTTGAACCTCAGTACTTCTCTCTCCGATGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTTGACAACCTCTTGATCATTTGGGATGAGATCTTTGCATCAGATAATAATAGTAAAGTGGAAAAAAGTGCTACTGATGACGTAAAGTGGGGGTTCGGGATCTTACATTCACCTCGTGGAGCATTTATCTCGGCTATGGCCGTAGTAATGTTACTTCATTTAAGATCTTCACTCCTTGCAACTGAAAATCCGACAACATGTCTCCAGAGATTATTAAACTTCCCCGAAGACATTAATATTGAAAAACTCCTAGAAAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTGTTGATATTTCATCCTCTTCACCTTTGTTTCTAGGGTCTCATCACCAAGGTAAATCAATGTTACCAAGACCTGTAACTCTTCAATCTGAATCTGTGTCTCCAAAAACACCTCTGAATTTGTTACCTGATAGCTATTGGGAAGAAAAGTGGAGGGTCGTCCACAATACTGACGAAAATAAGCAAGATGATGTACAAAAATCGATTCCAACTCGTAAAAAGGGGTGGACGGAAAAGGTCAAGATCAGTTTGAGAAGAACAGAGTCTGATCCACCTCCATCGAGGATTCAGGGTGGGAAAAAGTTACCGAAGGCATCTGTTAGGCGCAGTTTGGTAGAAGATCTTCGTAAGGCACTTGGCTCAGAGGAAGATACAGAACAAACGAACTGTCACGAAATCCTGTGCCAGCATGATAATCTTTCCGAAGCAGTTGAAGTAGAGCGACAAGATGGTGACTGTAAAGGTGACAACAATTGCTCATCCGATGATAGATGTCCAAGTGGAAGTGCAGGCAGTGAAGACGACTTGTCTGTATTGTCCGATCGGACTAGTCCTCCAAATGAGACCAATGGTCATGAAATTACCTCGGCGAAAAGTAGTGTTGCATCTAATTTATCCATTGATGAATCCAATGAAACTTCACAAACCAGCCTCAATGATCGACGTTTGTCGATCTCTGTTCCTCCTGATAACATACCTGAGATACAAGGGTCCAACGACAACGATGAAGCAAATCCAGCCACAGATCCTAAGGAAAGAAAACAGAATAAATTCCAGTGGTTATTGAAGTTCCGGAGGAATACTGTTGACCTTATCTCTGAGAAAATAGGAGGTGCTGCAGACACCTCAAAATCAGCCAACAGTTGTATTAATCAAAGTAATACTCCATCATCGGCGTCTTCTACCGCAAATACGCATGGTAGTTCAGTTACCTGCAAAGGAGATTCCGTAGACCAGAATATGATGGGTACTTTGAAGAATATTGGACAGTCTATGCTTGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGACAAGTCCCAAGGAACCTCAGTGGAGAACATGTCTAAAAATGTTCTTGTTGGCAAAGGCCAAGTTACTGCCATGTCAGCTCTGAAGGAGCTTAGGAAAATTAGCAATATTTTGTCTGAAATGTGA 2484 0.4295 MLLAPADPLLTPPPPPLNSDSVSLRSENQRFGDLRGLKWRINLGVLPSSTSIDNLRRVTADSRRRYASLRRRLLIEPHIPRSRSADLVMDNPLSQNPDSTWSRFFRSAELERMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDLGRLSEVQKLYDDLITDRFDGLLCQENDLCYSFDFRKSKDSVEDEIGSHGKATKVNSLDELDPEIQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMTHGSVATADFFSSSPLAGSLSGLPPVIDASTALYHLLSLVDSSLHSHLLDLGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFASDNNSKVEKSATDDVKWGFGILHSPRGAFISAMAVVMLLHLRSSLLATENPTTCLQRLLNFPEDINIEKLLEKAKSLQALALSVDISSSSPLFLGSHHQGKSMLPRPVTLQSESVSPKTPLNLLPDSYWEEKWRVVHNTDENKQDDVQKSIPTRKKGWTEKVKISLRRTESDPPPSRIQGGKKLPKASVRRSLVEDLRKALGSEEDTEQTNCHEILCQHDNLSEAVEVERQDGDCKGDNNCSSDDRCPSGSAGSEDDLSVLSDRTSPPNETNGHEITSAKSSVASNLSIDESNETSQTSLNDRRLSISVPPDNIPEIQGSNDNDEANPATDPKERKQNKFQWLLKFRRNTVDLISEKIGGAADTSKSANSCINQSNTPSSASSTANTHGSSVTCKGDSVDQNMMGTLKNIGQSMLDHIQVIESVFQQDKSQGTSVENMSKNVLVGKGQVTAMSALKELRKISNILSEM 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1232 827 MobiDBLite consensus disorder prediction 601 665 - -
Lal21g1232 827 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 27 757 - -
Lal21g1232 827 ProSiteProfiles TBC/rab GAP domain profile. 29 361 IPR000195 -
Lal21g1232 827 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 297 437 IPR035969 -
Lal21g1232 827 Gene3D - 300 443 - -
Lal21g1232 827 MobiDBLite consensus disorder prediction 1 23 - -
Lal21g1232 827 MobiDBLite consensus disorder prediction 499 529 - -
Lal21g1232 827 SMART tbc_4 26 408 IPR000195 -
Lal21g1232 827 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 94 281 - -
Lal21g1232 827 MobiDBLite consensus disorder prediction 499 549 - -
Lal21g1232 827 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 33 321 IPR035969 -
Lal21g1232 827 Pfam Rab-GTPase-TBC domain 111 169 IPR000195 -
Lal21g1232 827 Pfam Rab-GTPase-TBC domain 261 361 IPR000195 -
Lal21g1232 827 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 27 757 - -
Lal21g1232 827 MobiDBLite consensus disorder prediction 721 756 - -
Lal21g1232 827 MobiDBLite consensus disorder prediction 588 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1232 Lal-Chr21 15368167 15373714 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1232 K18469 - gmx:100812967 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1232 21 15368167 15373714 Lal21g1232 21 15368167 15373714 ECH
Lal17g1563 17 17064086 17069274 Lal21g1232 21 15368167 15373714 LSH
Lal14g1693 14 17102712 17107351 Lal21g1232 21 15368167 15373714 PCT
Lal19g1245 19 15670352 15674894 Lal21g1232 21 15368167 15373714 PCT
Lal21g1232 21 15368167 15373714 Lal14g1693 14 17102712 17107351 PCT
Lal21g1232 21 15368167 15373714 Lal19g1245 19 15670352 15674894 PCT