LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal19g1245	ATGGATCTTCCATTGCCGAAATCATCGCCGGTGAGCACTGACACCGTTTCTGAGAGACTGAGTGATCAATTCGAAGATCTTAGAGGTTTGCAGTGGCGTATAAATCTTGGGGTTTTGCCTAATTCTCCTTCAACTTCCATTGTTGATCTTCGTCGTGCCACTGCTGATTCTAGAAGGAGTTATGCCAGTTTGAGAGGGCAACTCCTGGTTGATCCACAACATTCAAAGGATGGAAGTAGTTCACTTCCACCCAATCTTATCATGGACAATCCACTCTCACAAAATCCAGATAGTACATGGAGTCGCCATTTTCGCAATGCAGAGCTGGAGAGGATGGTTGATAAGGATTTAACACGTTTATACCCAGAACATGGCAGTTATTTCCAGACACCAGGATGCCAAGGCATTTTGAGACGAATTTTATTATTATGGTGTCTGAGACACCCACAGTGCGGTTATAGACAAGGAATGCATGAACTACTTGCTCCACTGCTTTATGTTCTGCAAGTGGATGTTGAGCATCTTTCAGAAGTTCGGAAGCTTTATGAAGATCACTTCACTGACAGATTCGATGGACTTTTTTGTCAAGAGAATGATCTTTCTTACAACTTCGATTTTAGAAAATCTCCAGACTTGATGGAGGATGAAATTGGCTCCCATGGAAATGCAATGAAAATCAAGAGTCTTGATGAGCTTGATCCTAAGATACGAACCATTGTATTGCTAAGTGATGCTTATGGGGCTGAAGGTGAACTTGGTATTGTTTTATCTGAGAAGTTCATGGAGCATGATGCCTATTGTATGTTTGATGCTTTAATGAATGGGGCTCGTGGTTCAGTTGCAATGGCTGATTTCTTCTCTTATTCTCCTGTGGCTGGGTCCAATACTGGCTTGCCTCCTGTAATTGAAGCTTCTACTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTCTTCATGATTACCTTGTTGATCTTGGGGTTGAACCCCAGTACTTCGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTTCACCACCTCTTGATCATCTGGGACGAAATCTTTTTATCAGATAATAGTGAAGTGGTAAAGCATGTTGAGGACAACACAGAGTTTGGTTTTAGTATCTTTCATTCATCTCGTGGAGCATTTATCTCAGCTATTGCTGTTGCAATGTTACTTAATTTAAGATCTTCGCTATTCGCAACTGAAAATCCTACTACCTGTCTCCAGAGATTATTATCCTTCCCTGAGAAGACTAATATTAAGAAACTATTGCGGAAGGCTAAATCCTTGCATGCTCTTGCATTAACTTCTGATATTTCATGCTCAACACCTTCGTTTGCAGGGGGTCATAACCAAGGTAAATCAATTATTACAAGATCTCGGACCCTTCCATCTGAATCAGATTCTCCAAAAACTCCTATGAATTTGTTTCCTGATAGCTACTGGGAAGAACAGTGGAGACTTATCCACAAGGCTGAAGAACTTAAGAAAGCTGAAATAGAGAAAGATGCTCCAACTCGGGAAAAGGGGTGGAATGAAAAGGTAAATTTGAGTTTGAAAAGAGCAGAATCTCATCCATCTTTATCATGTAAGGAACTAGGCTCTGAGGAAGATACAGAAAAACTGCACTGTCATGAAATCGTATGCCAGCAGGATAATCTTTCTGTAACAGGTCAAGTGGAGCAACAAAGTTATGGCTCTGAAGGCTGCAATAGTTACTCTGCTGATGATAGATGTCTAAGTGGAAACATTGGCAGTGAAGAAAACATGTCTATAACTTCTGCCCCTTCTAGTCCTCCTAATGAGGCCAATGATCATGAAAATTACTCAGATAAAAGTAGTGTCGGGTCTAACTTATTTCTTGATGAAATCAACGAAATTCTAAATATTAGCCCCCTAGATTCACCTCTTCCAATCTCTGATCGTCCTGAGTGCATATCTCAGACACCAAGGTTCAAAGATGATTCCACGGGAAATATGGCCACAAATGCTAAGGAGATAAAACTGAATAAATTTCATTGGCTTTGGAATTTTGGGCAGAATAATGGCCAAGTTATATCTGAGAAAGAAGAAGGTTCTTCCGAGGCTGCAAAACCTGCCAACAATAGTAAGAGTCATAGTAGTACAACACCGTCTTCTGTAGCCGATGCGCACTGTAGTTCAGTTAGTTGCAATGGGGATTCTGTAGACCAGGATGTGATGGGCACTTTGAGGAATATTGGTCACTCTATGCTTGAGCATATTCAGGTGATTGAGTCTGCTTTCCAACAAGACCAGGGTCAGGGAGCCTCAGTGGATAACTTGTCTAAAAATGTTATGGTTGACTCAGGGCAAGTTACTGCCATCACAGCTCTAAAGGCGCTTCGTAAAATTAGCAATCTTCTATCTGAGATGTGA	2415	0.4124	MDLPLPKSSPVSTDTVSERLSDQFEDLRGLQWRINLGVLPNSPSTSIVDLRRATADSRRSYASLRGQLLVDPQHSKDGSSSLPPNLIMDNPLSQNPDSTWSRHFRNAELERMVDKDLTRLYPEHGSYFQTPGCQGILRRILLLWCLRHPQCGYRQGMHELLAPLLYVLQVDVEHLSEVRKLYEDHFTDRFDGLFCQENDLSYNFDFRKSPDLMEDEIGSHGNAMKIKSLDELDPKIRTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMNGARGSVAMADFFSYSPVAGSNTGLPPVIEASTALYHLLSHVDSSLHDYLVDLGVEPQYFALRWLRVLFGREFSLHHLLIIWDEIFLSDNSEVVKHVEDNTEFGFSIFHSSRGAFISAIAVAMLLNLRSSLFATENPTTCLQRLLSFPEKTNIKKLLRKAKSLHALALTSDISCSTPSFAGGHNQGKSIITRSRTLPSESDSPKTPMNLFPDSYWEEQWRLIHKAEELKKAEIEKDAPTREKGWNEKVNLSLKRAESHPSLSCKELGSEEDTEKLHCHEIVCQQDNLSVTGQVEQQSYGSEGCNSYSADDRCLSGNIGSEENMSITSAPSSPPNEANDHENYSDKSSVGSNLFLDEINEILNISPLDSPLPISDRPECISQTPRFKDDSTGNMATNAKEIKLNKFHWLWNFGQNNGQVISEKEEGSSEAAKPANNSKSHSSTTPSSVADAHCSSVSCNGDSVDQDVMGTLRNIGHSMLEHIQVIESAFQQDQGQGASVDNLSKNVMVDSGQVTAITALKALRKISNLLSEM	804

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal19g1245	804	ProSiteProfiles	TBC/rab GAP domain profile.	22	362	IPR000195	-
	Lal19g1245	804	Pfam	Rab-GTPase-TBC domain	108	169	IPR000195	-
	Lal19g1245	804	Pfam	Rab-GTPase-TBC domain	261	363	IPR000195	-
	Lal19g1245	804	SMART	tbc_4	19	387	IPR000195	-
	Lal19g1245	804	Gene3D	-	301	444	-	-
	Lal19g1245	804	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	23	733	-	-
	Lal19g1245	804	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	26	287	IPR035969	-
	Lal19g1245	804	Gene3D	putative rabgap domain of human tbc1 domain family member 14 like domains	92	278	-	-
	Lal19g1245	804	MobiDBLite	consensus disorder prediction	590	619	-	-
	Lal19g1245	804	MobiDBLite	consensus disorder prediction	452	480	-	-
	Lal19g1245	804	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	298	437	IPR035969	-
	Lal19g1245	804	MobiDBLite	consensus disorder prediction	693	723	-	-
	Lal19g1245	804	MobiDBLite	consensus disorder prediction	702	723	-	-
	Lal19g1245	804	PANTHER	YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN	23	733	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal19g1245	Lal-Chr19	15670352	15674894	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal19g1245	K18469		-	gmx:100816501	1093.57

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal19g1245	19	15670352	15674894	Lal19g1245	19	15670352	15674894	ECH
	Lal14g1693	14	17102712	17107351	Lal19g1245	19	15670352	15674894	LSH
	Lal19g1245	19	15670352	15674894	Lal17g1563	17	17064086	17069274	PCT
	Lal19g1245	19	15670352	15674894	Lal21g1232	21	15368167	15373714	PCT
	Lal17g1563	17	17064086	17069274	Lal19g1245	19	15670352	15674894	PCT
	Lal21g1232	21	15368167	15373714	Lal19g1245	19	15670352	15674894	PCT