Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1563 ATGCCGCCGTCTCTGGAGGATCCTTTGTTGCTGCCACCGTCACTTCAGCCGTTGAGCTCTGACTCTGTTTCCCGGAGATGTGAGGATCAGCGATTCGGTGATCTTAGAGGGTTGAAATGGCGAATAAATCTTGGGGTCTTGCCAGCTTCATCTTCAATTGATGATCTTCGCCGAGCCACAGCTGATTCCAGAAGGAGGTATGCCAGTTTAAGAAGGCAACTCCTGGTTGAAACACATATAGCAAAGGATGGAAGTAGTTCAGACGATGTTGTCATGGACAACCCCCTTTCACAAAATCCAGATAGTTCATGGAGTCGCTTTTTTCACTGTGTAGAGATAAAGAGAATTGTTGTTCAGGATTTATCACGTTTATACCCAGAGCATGGCAGTTATTTCCAGACACCAGGATGCCAAGGAATGTTGAGACGAATTTTATTACTTTGGTGTCTCAAGCACCCAGAATGTGGTTATAGACAAGGAATGCACGAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATCTGGAGAGTCTTTCCGAAGTTCGAAAGCTTTATGAAGATCTCTTCACAGACAGATTTGATGAACTTTTATGTGAAGAGAATGATCTTTGTTACAACTTTGAATTTCAAAAATCTCATGACTCGTTGGACGATGAAACTGACTCCCATGGAAAGGCAATGAACTGTCTTGATGAACTTGATCCTGAGATACAGACCTTTGTATTGCTAAGTGATGCTTATGGCGCGGAAGGTGAACTGGGTATTGTTTTATCGGAGAAATTTATGGAACATGATGCTTTCTGTATGTTTGATGCTTTAATGACCCACGGTTCAGTTGCAACGGCCAATTTCTTCTCTTCCTCTCCGGTAGCTGACTCCCTTAGTGGCCTCTCCCCTGTGATTGAAGCTTCTACTGCATTATATCATTTGTTATCTCTTGTGGATTCATCTCTACATAGCCATCTTTTGGATCTTGGGGTTGAACCTCAGTACTTCTCTCTCCGATGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTTGACAACCTCTTGATCATCTGGGATGAGATCTTTGCATCAGATAATAATAGTAAAGTGGAAAAAAGTGCTGATGACGACATAGAGTGGAGGTTCCGGATCTTACATTCACCTCGTGGAGCATTTATCTCAGCTATTGCTGTAGCAATGTTACTTCATTTAAGATCTTCACTCCTTGCAACTGAAAATCCTACAACCTGTCTCCAGAGATTGTTAAACTTCCCTGAAGGCATCAATCTTGAAAAACTACTAGAAAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTGTTGATATTTCATCATCTTCACCACTGTTTCTAGGGTTTCATCACCGAAGTAAATCAATGTTTTCAAGTTCTGTGACCCTTCTATCCGAATCTGCATCTCCAAAAACGCCTATGAATTTGTTACCCGATAGCTATTGGGAAGATAAGTGGAGAGTTGCCCAAAATACTGAAGAAAGTAAGCAAGATGATGTACAAATATCGGTTCCAACTCGGAAAAAGAGATGGACAGAAAAGGTCAAGATCGGTTTGAGAAGAACAGAATCTGATCCACCTCCATCAAGGATTCAAAGTGCCAAAAGGTTACCTAAGGCATCTGTTAGGCGCAGTTTGTTAGAAGATCTTCATAAGACCCTTGGCTTGGAGGAAGATGCAGAACAAACAAACTGTCATGAAATCCTGTGCCAGCAGGATAATCTTTCTGTAGTAGTTGAAGAGGAGCGACAAGATGGTGACCGTAAAGACGACAGCAATTACTCGTCTGATGATAGATGTCCAAGTGGAAGTACAGGCAGTGAGGACAACTTTTCTGTATTCTCTGAATGCAATGAAACTTCACAAACCAGCCTCAATGATCCACCTGTGCCAACCTCTGTTCCTCCTGAGAACATACCTGAGACATCAGGGTCCAATGACAACGATGAAGGAAATTCAGCCTCGGATCCTAAGGAAAGAAAACAGAATAAACTCCAGTGGGTATTGAAGTTCGGACGGAATACTGTTGACTATATCTTCGATAAAGTAGGCGGTGCTGCGAAGGCTGCAAAATCGGCTAACATCTCTAGTAACCAAAGTAATACTCCATCACCGGCATCTTCTACCGCAAATGCGCATGATAATTCTGTTAGCTGCATAGAGCAGAATATGATGGGTAGTAGTTTGAAGAATATTGGACAGTCAATGCATGACCATATTCAGGTAATTGAATCTGTTTACCAACAAGGCAAAGGCCATGTTACTGCTATGTTAGCTCTTAAGGAGCTTCAGAAAATTAGCAATCTTTTATCTGGGATGTGA 2343 0.4204 MPPSLEDPLLLPPSLQPLSSDSVSRRCEDQRFGDLRGLKWRINLGVLPASSSIDDLRRATADSRRRYASLRRQLLVETHIAKDGSSSDDVVMDNPLSQNPDSSWSRFFHCVEIKRIVVQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLKHPECGYRQGMHELLAPLLYVLQVDLESLSEVRKLYEDLFTDRFDELLCEENDLCYNFEFQKSHDSLDDETDSHGKAMNCLDELDPEIQTFVLLSDAYGAEGELGIVLSEKFMEHDAFCMFDALMTHGSVATANFFSSSPVADSLSGLSPVIEASTALYHLLSLVDSSLHSHLLDLGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFASDNNSKVEKSADDDIEWRFRILHSPRGAFISAIAVAMLLHLRSSLLATENPTTCLQRLLNFPEGINLEKLLEKAKSLQALALSVDISSSSPLFLGFHHRSKSMFSSSVTLLSESASPKTPMNLLPDSYWEDKWRVAQNTEESKQDDVQISVPTRKKRWTEKVKIGLRRTESDPPPSRIQSAKRLPKASVRRSLLEDLHKTLGLEEDAEQTNCHEILCQQDNLSVVVEEERQDGDRKDDSNYSSDDRCPSGSTGSEDNFSVFSECNETSQTSLNDPPVPTSVPPENIPETSGSNDNDEGNSASDPKERKQNKLQWVLKFGRNTVDYIFDKVGGAAKAAKSANISSNQSNTPSPASSTANAHDNSVSCIEQNMMGSSLKNIGQSMHDHIQVIESVYQQGKGHVTAMLALKELQKISNLLSGM 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1563 780 Coils Coil 53 73 - -
Lal17g1563 780 MobiDBLite consensus disorder prediction 586 668 - -
Lal17g1563 780 MobiDBLite consensus disorder prediction 644 658 - -
Lal17g1563 780 ProSiteProfiles TBC/rab GAP domain profile. 30 362 IPR000195 -
Lal17g1563 780 Pfam Rab-GTPase-TBC domain 115 194 IPR000195 -
Lal17g1563 780 Pfam Rab-GTPase-TBC domain 262 362 IPR000195 -
Lal17g1563 780 Gene3D - 301 444 - -
Lal17g1563 780 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 300 438 IPR035969 -
Lal17g1563 780 SMART tbc_4 27 409 IPR000195 -
Lal17g1563 780 MobiDBLite consensus disorder prediction 604 635 - -
Lal17g1563 780 MobiDBLite consensus disorder prediction 698 720 - -
Lal17g1563 780 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 653 727 - -
Lal17g1563 780 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 28 533 - -
Lal17g1563 780 MobiDBLite consensus disorder prediction 1 23 - -
Lal17g1563 780 MobiDBLite consensus disorder prediction 586 603 - -
Lal17g1563 780 MobiDBLite consensus disorder prediction 522 547 - -
Lal17g1563 780 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 34 322 IPR035969 -
Lal17g1563 780 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 653 727 - -
Lal17g1563 780 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 28 533 - -
Lal17g1563 780 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 105 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1563 Lal-Chr17 17064086 17069274 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1563 K18469 - gmx:100816501 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1563 17 17064086 17069274 Lal17g1563 17 17064086 17069274 ECH
Lal17g1563 17 17064086 17069274 Lal21g1232 21 15368167 15373714 LSH
Lal14g1693 14 17102712 17107351 Lal17g1563 17 17064086 17069274 PCT
Lal19g1245 19 15670352 15674894 Lal17g1563 17 17064086 17069274 PCT
Lal17g1563 17 17064086 17069274 Lal14g1693 14 17102712 17107351 PCT
Lal17g1563 17 17064086 17069274 Lal19g1245 19 15670352 15674894 PCT