Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0315 ATGCTTTGTAAACTTGTTGAGTTGCCAAGGAAGAAAAAGCGTGGTACTGTTCCTGTTTATCTCAATGTTTATGATCTCACTTCCATCAATGGCTATGCTTATTGGTTTGGCCTTGGAGTCTATCATTCTGGTGTTCAAGTACATGATACTGAATATGGTTTTGGAGCGCATGAACATAACACAACTGGAATTTTTGAAGTGCAACCGAGACACTGTCCTGGGTTTACTTTCAGAAAATCAATTTTCATTGGAACAACGGATCTGGGAACGAAAGATGTTCGGGCATTTATGGAGAAACTAGCTGAAGACTACTCCGGGAACACCTATCATCTCATCTCAAAAAACTGCAACCACTTTTGTAATGATGTTTGTCTCAAATTAACAGGAAGATCAATCCCTCGATGGGTGAATCGACTTGCTCGACTTGGTCTTCTCTGCAACTGTGTTCTCCCTCCGGGGCTAAATGACACGAAAGTTCGTCATGTTACGTTAGAAAAGGTTCAGGAAGGCGAGAAGAAGAAAACAAGAGGCCAGTCCAAAAGTTATGAGGCTTCCTCCAATCCTCCATTGCCGTCTTGCCCTCAAGGTTCTGCAATTAAAATAAGTAGCCGAAAAGGCGAAGACATTGCCTTGCTCCATAATGCTTCTTCAACTCCAACCTTAACAGTAAAGTAA 675 0.4193 MLCKLVELPRKKKRGTVPVYLNVYDLTSINGYAYWFGLGVYHSGVQVHDTEYGFGAHEHNTTGIFEVQPRHCPGFTFRKSIFIGTTDLGTKDVRAFMEKLAEDYSGNTYHLISKNCNHFCNDVCLKLTGRSIPRWVNRLARLGLLCNCVLPPGLNDTKVRHVTLEKVQEGEKKKTRGQSKSYEASSNPPLPSCPQGSAIKISSRKGEDIALLHNASSTPTLTVK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0315 224 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Lal21g0315 224 MobiDBLite consensus disorder prediction 180 197 - -
Lal21g0315 224 MobiDBLite consensus disorder prediction 167 197 - -
Lal21g0315 224 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Lal21g0315 224 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 2 203 - -
Lal21g0315 224 Pfam PPPDE putative peptidase domain 18 150 IPR008580 GO:0008233
Lal21g0315 224 Gene3D PPPDE domains 12 172 IPR042266 -
Lal21g0315 224 PANTHER DESUMOYLATING ISOPEPTIDASE 2 203 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0315 Lal-Chr21 2114746 2117448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0315 K22763 - gmx:100306675 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0212 17 1302002 1303804 Lal21g0315 21 2114746 2117448 LSH
Lal21g0315 21 2114746 2117448 Lal4g0201 4 1257729 1259890 LSH
Lal10g0029 10 306037 309404 Lal21g0315 21 2114746 2117448 PCT
Lal21g0315 21 2114746 2117448 Lal10g0029 10 306037 309404 PCT