Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1222 ATGTCTGCTGCTGTGTGTGGAAGCAAGAGAGTTTTTCTAGAAGAACTTCCACCTTCTCCACCACTATCGAAGAGGCTTCGTTGTTCTTCATCAACTTCACCTATTCGATTACCTCATCATTCTCTCATCGATCAACTTCGCAATCTCTTTCCTCATATGGATCACCTCCTTTATGAGAGAGCTATTCAAGAATCTGGCAATGATCTAGAAGCCGCCATCAAGAGGCTGAATGAGCTTTGCTTGGAAACTGTTGATGGAAACTCTGGAACTGCAGCTAAATTGGAAGGCGACGGAAATGCTTCTGCTTCTGAGGATCAACCTGCTTTGAACACCTTTCCTGTGAATGGTGCAGAGTGGGTTGAATTTTTCGTTACAGAAATGAGTGTCGCTACTAATGTTGACGATGCTAGAGGCCGTGCTGCGAGAATGCTGGAGATTCTAGAGAAATCAATCAGTGCACGTGCTGGTGCTGATGCAGCTGAGATTCTTCAGAAGGAAAATCTCCTGCTGAAGCAGCAAGTTGAAGTGTTGATTAAGGAGAAGAATTCTTTCAAGAATGCTTTCAGAATCCAGCATGAGCGCCTTTCTGATTATGAGGATAAGAACCAAGAGTTGCAGCGTTTGAAGCAGTTGGTGTCTGAACATGAGGAGCACATCAGAAATCTTGAGATGAAAAACTATACTCTGAGACTGCATTTGGAGCGCGCTTATCAGAACAACAACCCCTTTCCTGGACCTTTCCCTCCTGATTTCTTCTAA 759 0.4414 MSAAVCGSKRVFLEELPPSPPLSKRLRCSSSTSPIRLPHHSLIDQLRNLFPHMDHLLYERAIQESGNDLEAAIKRLNELCLETVDGNSGTAAKLEGDGNASASEDQPALNTFPVNGAEWVEFFVTEMSVATNVDDARGRAARMLEILEKSISARAGADAAEILQKENLLLKQQVEVLIKEKNSFKNAFRIQHERLSDYEDKNQELQRLKQLVSEHEEHIRNLEMKNYTLRLHLERAYQNNNPFPGPFPPDFF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1222 252 ProSiteProfiles CUE domain profile. 38 83 IPR003892 GO:0043130
Lal20g1222 252 Coils Coil 160 180 - -
Lal20g1222 252 CDD CUE 40 76 - -
Lal20g1222 252 Coils Coil 195 225 - -
Lal20g1222 252 SUPERFAMILY UBA-like 38 83 IPR009060 GO:0005515
Lal20g1222 252 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 252 - -
Lal20g1222 252 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1222 Lal-Chr20 16706225 16711680 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1222 - - lang:109347770 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1222 20 16706225 16711680 Lal20g1222 20 16706225 16711680 ECH
Lal20g1222 20 16706225 16711680 Lal1g1248 1 13756937 13762599 LSH
Lal20g1222 20 16706225 16711680 Lal18g0212 18 1755204 1759873 LSH
Lal8g0202 8 1357872 1360608 Lal20g1222 20 16706225 16711680 PCT
Lal20g1222 20 16706225 16711680 Lal8g0202 8 1357872 1360608 PCT