Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0212 ATGGATTCCGAATGCGTTGGCGATTTTGTGAAATGTTTGAAATGTTGTGAGTCCGGGTGTGATTGCTCGATGGCAGCGAAAAGGAAGCATGATGAGTTGGAACAAGAGGGTTTGGATTATTCGATTGCGCGCGTGGAAATAGGCGATGAATGCGCTGCATTGCGTGAGGCGGTTAGCAATCAGCAACAATCTATACAGAATCTGTATTCTGAATTGGAGGAGGAAAGGAACGCTTCCTCCTCGGCCGCCAATGAGGCTATGTCAATGATATTGAGGCTGCAGAGGGAGAAGGCAGAACTTCAAATGGAAGCGCGGCAGTTCAAGCGTTTCGTCGAGGAGAGGAATTCGCATGATCAGCAAGAGCTTTTAATGTTGGAGGATTTGTTGTATCAAAAAGAACAAGTGATTCAGTCACTAACATGTGAAATTCAAGCTTATAAGCATAGGTTGTTGAGTTTTGGCATCACCGAGTCAGAGGCGGATGAAATTCCCCCGTATGAGTACCCTCCTTTGAGATGTAATGTAATCAATGTTGTAACCAATGATGATAATGATGACATAGATATTGAAAAACATGTATTTGGCGAAACGCCTAGGGATCGTGTGAGGAACTTGAAAAATAAGATCACTCAACTCGAGACTAGTCCAACTTATAGCCAGATGGAGGGGGATTTAACAGGAAAAAATGTTCTAGACAAAGTGGTGGTTGGACAATCTCCAAGATGGACTAAGCATTCTAGGAAATTTTCTTCGGAATCAACTTCGTTTTGCCCTGAGCTTCTAATGGATTCTCCAAGGCTCAATTGTAGCTTTAAGAAGATCGATGAGGAGCATTCCAATTTGAACATGGTAGATAATGCATCAGAAGGTGGCGATGATATGAGTGACACTAGAGTCTATACAATTGACTATGTTAACAATAATGGTTCCACAGATTTCAAAGCTGGAGCTGGAGTTTATGATGACTACGGAACCACTCCGAGGGATGTAGGATTTAATGCAAATTTCGAAGATCCCTATGTGAAGAAACTTTACACGAGGCTTCAGGCACTCGAGGCCGATAGGGAATCGATGAGGCAGGCAATCATTTCAATGCGTACCGATAAAGCACAGATAGTTTTACTTAAAGAAATAGCTCAAAATTTGTGCAAAGAGATGTCAATGGAAAGAAAACAGGCAATGAGGAAGAGATCTGTTGTTGGTCGCTTTCGATTCGCAACATTTTTTAAGTGGATCACATCAATTCTTTTCTGGAGAAGAAAAGCTACTGAAATCAAGTACATGTTTGGGCTACCATCTAACAATGATGGCTTATATTTGCTCATCAACAAGGAACCCCATGTAAGGTCATGGAGATATCTTACAAGTACACAATTGGGAGAATAG 1386 0.417 MDSECVGDFVKCLKCCESGCDCSMAAKRKHDELEQEGLDYSIARVEIGDECAALREAVSNQQQSIQNLYSELEEERNASSSAANEAMSMILRLQREKAELQMEARQFKRFVEERNSHDQQELLMLEDLLYQKEQVIQSLTCEIQAYKHRLLSFGITESEADEIPPYEYPPLRCNVINVVTNDDNDDIDIEKHVFGETPRDRVRNLKNKITQLETSPTYSQMEGDLTGKNVLDKVVVGQSPRWTKHSRKFSSESTSFCPELLMDSPRLNCSFKKIDEEHSNLNMVDNASEGGDDMSDTRVYTIDYVNNNGSTDFKAGAGVYDDYGTTPRDVGFNANFEDPYVKKLYTRLQALEADRESMRQAIISMRTDKAQIVLLKEIAQNLCKEMSMERKQAMRKRSVVGRFRFATFFKWITSILFWRRKATEIKYMFGLPSNNDGLYLLINKEPHVRSWRYLTSTQLGE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0212 461 PANTHER ZEIN-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 1 436 - -
Lal20g0212 461 PANTHER BNAANNG28530D PROTEIN 1 436 - -
Lal20g0212 461 Coils Coil 341 368 - -
Lal20g0212 461 Coils Coil 376 396 - -
Lal20g0212 461 Coils Coil 51 110 - -
Lal20g0212 461 Pfam Zein-binding 53 143 IPR007656 -
Lal20g0212 461 ProSiteProfiles GTD-binding domain profile. 49 147 IPR007656 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0212 Lal-Chr20 1503234 1505207 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0212 - - gmx:100797605 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0212 20 1503234 1505207 Lal20g0212 20 1503234 1505207 ECH
Lal1g1718 1 19598543 19601437 Lal20g0212 20 1503234 1505207 LSH
Lal20g0212 20 1503234 1505207 Lal13g1274 13 11342290 11345786 PCT
Lal20g0212 20 1503234 1505207 Lal24g1136 24 12212571 12216590 PCT
Lal13g1274 13 11342290 11345786 Lal20g0212 20 1503234 1505207 PCT
Lal24g1136 24 12212571 12216590 Lal20g0212 20 1503234 1505207 PCT