Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0067 ATGGATTTCTCTCTTTCCAAGTTGTGCCACTCTCCCACCCATCTCTCACTCAATCTCCACCGTTCATCTCTCCCATCTCAATTATCTTCTTCTACCTTCGTTTCCTTCAAGTCTCTCCCATCCTCAACGTCGTCGTTTAAGATCAAAGCCTCACTAAACGACCCTCCGTTTCACAAACACAACAAAAATACACTCCTCCAAACCCTAATTTCCCCAATTGTTGAAACCACCTGCGTCGTCATCGCCGCCACCGCGTTCTTCTTCGTCCGCCACATGCCCGTCGTCGCCTCCCCCCTCCCCCCGCTATCCACCGTCGCGTCTGAACAAAGCATAGACGCCGCCGAAGAAAGCGAGAGAGTCCTCGAGTCGCGCTTGAGCGAAAACCCTAAGGACATCGAAGCGCTCCGCACTCTCGTGCAGCTGAAAATCCGAGCACGCAAAACCAACGAAGCGATTCAAGTCATTGAGCGCTTAATCGAGCTCGAACCAGAAGAGTTCGAATGGCCTTTGCTCAAAGCTAATATGCATGTTTACAATGATGATTATGAACTTGCACGCAACATGTTTGAGGAAATTCTCAAAAGAGATCCCCTTCGCATTGAAGCTTATCATGGTCTTGTTATGGCGATTTCAGAGTCCAACCAGCCATTGGATGATCTGTTGAATAGGGTTGAGGAAGCAGTGGAGAATTCCAAGAAGGAAAATAAATATTCTGAGGTGAGAGATTTTAAGCTGTTGATCGCTCAAATTAAGGTGTTGCAGGGAGATTTTCCGGAGGCGCTGAATAATTATCAGGATTTGGTGAAGGAGGAACCAAGAGATTTTAGGCCTTACCTGTGTCAGGGTATCATATATACCCTGCTGAAGAAGAAAGATGAAGCTGAGAAACAGTTCAAAAAGTTCCAAAGACTTGTTCCGAAGAATCATCCTATTAGGGATTATTTTGAGGACAGTATGTTTTCATCCAAGTTATTCTCTCAGAATTTTGAAAGGGAAGGAGCAGCCGAATGCAGTCTGATTGTGGCAGCAGTAGATGATGCCGCCTGCTATTTAGAACCTTGTTTCCTTCAATATGATGGTTCGTTCTTCTTCCCATCTTCTTAG 1104 0.4583 MDFSLSKLCHSPTHLSLNLHRSSLPSQLSSSTFVSFKSLPSSTSSFKIKASLNDPPFHKHNKNTLLQTLISPIVETTCVVIAATAFFFVRHMPVVASPLPPLSTVASEQSIDAAEESERVLESRLSENPKDIEALRTLVQLKIRARKTNEAIQVIERLIELEPEEFEWPLLKANMHVYNDDYELARNMFEEILKRDPLRIEAYHGLVMAISESNQPLDDLLNRVEEAVENSKKENKYSEVRDFKLLIAQIKVLQGDFPEALNNYQDLVKEEPRDFRPYLCQGIIYTLLKKKDEAEKQFKKFQRLVPKNHPIRDYFEDSMFSSKLFSQNFEREGAAECSLIVAAVDDAACYLEPCFLQYDGSFFFPSS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0067 367 SUPERFAMILY TPR-like 118 314 IPR011990 GO:0005515
Lal20g0067 367 Gene3D Tetratricopeptide repeat domain 104 322 IPR011990 GO:0005515
Lal20g0067 367 ProSiteProfiles TPR repeat profile. 132 165 IPR019734 GO:0005515
Lal20g0067 367 Pfam Tetratricopeptide repeat 248 308 - -
Lal20g0067 367 PANTHER BNAA03G17190D PROTEIN 11 328 - -
Lal20g0067 367 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 11 328 - -
Lal20g0067 367 SMART tpr_5 132 165 IPR019734 GO:0005515
Lal20g0067 367 SMART tpr_5 166 199 IPR019734 GO:0005515
Lal20g0067 367 SMART tpr_5 241 274 IPR019734 GO:0005515
Lal20g0067 367 SMART tpr_5 275 308 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0067 Lal-Chr20 445208 447039 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0067 - - lang:109348412 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1127 11 15010809 15011909 Lal20g0067 20 445208 447039 LSH
Lal1g1845 1 20717866 20721488 Lal20g0067 20 445208 447039 LSH
Lal20g0067 20 445208 447039 Lal13g1106 13 8409137 8410153 PCT
Lal13g1106 13 8409137 8410153 Lal20g0067 20 445208 447039 PCT