Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1127 ATGCTCCCACTCGCCACTTCCACTCACTTTCATACTTCACCAATGGATTTCTCTCTTTCAATATTACGTCACTCTCCTAACCTCTCTCTCAATCTCCACCGTTCATCTCTCCCATCTACCTTATCCTCTTCTTCTTCTTCTTCCCTTTCTTTCAAGTCCCTCCAACCACCACCACCCTCAACGTCGTCGTTTCACCTCTCACCTATCAAAGCCTCACTAAACGACCCTGCGTTTCATAAACCCACAAAAACCTCATCCTCTTCTCTCCTCCAAACCCTAATTTCCCCTTTCCACTCCCCCGTCGTCGAAACCACTTGCATCGTTATCGCCGCCACCGCATTCTTCTTCATGCGCCACATGCCCGTCACCGCCGCTCCTCTCCCGTTACCTTCCTCCGTCGCGTCGGAACAAAACATAGCCCCCGACGAAGAAACTGAGAGGCTCGTTGAATCGCGGTTGAGCGAAAACCCTAACGACATTGAAGCGCTTCGCACTCTCATGGAGCTGAAAATCCGTGCTCGCAAAGTCAACGAAGCGATTCAAGTCATTGAACGCTTGATTGAGCTTGAACCTGAGGAGGTTGAATGGCCTTTGCTCAAAGCACATATGCATGTTTACAATGATGATCATCAACTTGCACGCAATGTGTTCGAGGAAATTCTCCAGAAAGACCCGCTTCGTGTTGAAGCTTATCACGGCCTTGTAATGGCGACTTCAGAATCAAACGAACCATTGAATGATGTATTGAAGAGGGTTGAGGAAGCTGTGGATAATTGCAAGAAGGAAAAGAAAGATTCCGAGGTGCGCGATTTTAAGCTGTTGATCGCGCAGATTAAGGTGATGGAGGGTGATTTCTCAGAGGCGCTGAAGAATTATCAGGATCTGGTGAAGGAAGAACCACAAGATTTTCGGCCTTACTTGTGTCAGGGTATTATATACACTCTGTTGAGGAAGAAAGATGAAGCTGAAAAACAGTTCCAGAAGTTTCGGGGGCTTGTTCCGAAAAATCATCCTTATAAGGAGTATTTTGATGACAACATGTTTGCAACTAAGTTTTTCTCTCAGAAGCTTGAAAGGGAAGGAGCTAGTGCCAGGAACTAG 1101 0.4678 MLPLATSTHFHTSPMDFSLSILRHSPNLSLNLHRSSLPSTLSSSSSSSLSFKSLQPPPPSTSSFHLSPIKASLNDPAFHKPTKTSSSSLLQTLISPFHSPVVETTCIVIAATAFFFMRHMPVTAAPLPLPSSVASEQNIAPDEETERLVESRLSENPNDIEALRTLMELKIRARKVNEAIQVIERLIELEPEEVEWPLLKAHMHVYNDDHQLARNVFEEILQKDPLRVEAYHGLVMATSESNEPLNDVLKRVEEAVDNCKKEKKDSEVRDFKLLIAQIKVMEGDFSEALKNYQDLVKEEPQDFRPYLCQGIIYTLLRKKDEAEKQFQKFRGLVPKNHPYKEYFDDNMFATKFFSQKLEREGASARN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1127 366 ProSiteProfiles TPR repeat profile. 160 193 IPR019734 GO:0005515
Lal11g1127 366 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 22 359 - -
Lal11g1127 366 Coils Coil 166 186 - -
Lal11g1127 366 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 22 359 - -
Lal11g1127 366 SUPERFAMILY TPR-like 158 343 IPR011990 GO:0005515
Lal11g1127 366 SMART tpr_5 303 336 IPR019734 GO:0005515
Lal11g1127 366 SMART tpr_5 160 193 IPR019734 GO:0005515
Lal11g1127 366 SMART tpr_5 269 302 IPR019734 GO:0005515
Lal11g1127 366 Coils Coil 245 269 - -
Lal11g1127 366 Gene3D Tetratricopeptide repeat domain 129 349 IPR011990 GO:0005515
Lal11g1127 366 ProSiteProfiles TPR repeat profile. 269 302 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1127 Lal-Chr11 15010809 15011909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1127 - - lang:109348412 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1127 11 15010809 15011909 Lal1g1845 1 20717866 20721488 LSH
Lal11g1127 11 15010809 15011909 Lal20g0067 20 445208 447039 LSH
Lal11g1127 11 15010809 15011909 Lal13g1106 13 8409137 8410153 PCT
Lal13g1106 13 8409137 8410153 Lal11g1127 11 15010809 15011909 PCT