Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1350 ATGGGTATTCAAATAAGGCTTATGGGTCGGTGTTCATGGATATACTATTTGCTATGCTTATGCTTCATTGTAGTGAATGTAGAAGGAGATGCAACTGAGAATGGTTCTGTATTAATTCATGGGAAATCTTTGATTGGAAAGATAGATGATGATTTTGTGTGTGCAACTTTAGATTGGTGGCCTCCAGAGAAATGTGACTATGGAAGATGCAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGACCTCAACAATAAAATTTTGTTAAATGCAGTAAAAGCCTTTTCACCTTTGAAAATCAGATTAGGAGGCACTTTGCAAGATAAGCTCATATATGGGACTGAAGATTATCACCATCCATGTACTCCTTTTGTTCACAACACTAGTCAATTGTTTCATTTCACTCAAGGGTGCTTACCCTTACATAGGTGGGATGAGCTAAACAGCTTTTTCAAAAAAGCAGGGGCTAAGATTATTTTTGGGTTGAATGCTCTTGCTGGAAAGTCCTTTCAGTCTAGTTATGCAGTTGGACCTTGGAATTATACTAATGCAGAATCTTTTATACGTTACACTGTAAAAAAGAACTACATCATTCATGGTTGGGAACTTGGCAATGAATTGAGTGGGAAGGGAATTGGAAAAAGTATTTCTGCAGATCAATATGCTTCTGATGTTGTTGCTTTACGAAACATTATTCAAAATGTATACAAAGGGGTTGAGCCTAAACCACTAGTTATCGCACCTGGCGGCTTCTTTGATGCAAATTGGTTCAAAGAATTTGTAACCAAAGCGGGTAAATCTGTGGATGTGGTAACTCACCACATTTATAACCTTGGGCCAGGAGTTGATGACCACTTAACTGAAAAAATTCTTGATCCTTCCTATCTTGATGGAGAGGCTAGCACATTCAAGAGCCTAAAAAATATTCTTCGAACTTCAGCAACCTCAGCAACAACATGGGTTGGTGAGGCAGGAGGGGCTTACAACAGTGGCCATCATCTTGTGTCTGATGCATTTGTCTACAGCTTCTGGTATTTGGACCAACTTGGCATGTCTGCTATTTATGACACCAGAACATACTGCAGACAAACTTTGATAGGAGGAAACTATGGTTTATTGGATACTAAAACTTTCATACCAAATCCAGATTACTACAGTGCTCTTCTTTGGCACCGGCTCATGGGACGACAAGTCCTGACAACTAGCTTCCTTGGGACAAAGAAGATAAGAGCTTATGCACACTGTGCAAAGCAATCACAAGGAATCACAGTACTATTACTGAACTTGAGCAACCAGACATCTGTTCAAGCTAAATTGGCCATAACATTTGTTAAGGTACCTTATGAACGTAAAAAACTCAGAGAAGAGTACCATTTAACAGCACAAAGTCAGAACATACATAGCCAAACCATGTTATTAAATGGTAACATTCTAAGTGTAAACAAAGATGGTGATATTCCACCTTTGAAGCCTTTATATGTTGACCCATCAAAGCCAATAGTAATTGGTCCTCTCTCTGTTGTATTTGCACATATACCAAATGCTATTATTCCAGCTTGCACCTAA 1563 0.389 MGIQIRLMGRCSWIYYLLCLCFIVVNVEGDATENGSVLIHGKSLIGKIDDDFVCATLDWWPPEKCDYGRCSWGLASLLNLDLNNKILLNAVKAFSPLKIRLGGTLQDKLIYGTEDYHHPCTPFVHNTSQLFHFTQGCLPLHRWDELNSFFKKAGAKIIFGLNALAGKSFQSSYAVGPWNYTNAESFIRYTVKKNYIIHGWELGNELSGKGIGKSISADQYASDVVALRNIIQNVYKGVEPKPLVIAPGGFFDANWFKEFVTKAGKSVDVVTHHIYNLGPGVDDHLTEKILDPSYLDGEASTFKSLKNILRTSATSATTWVGEAGGAYNSGHHLVSDAFVYSFWYLDQLGMSAIYDTRTYCRQTLIGGNYGLLDTKTFIPNPDYYSALLWHRLMGRQVLTTSFLGTKKIRAYAHCAKQSQGITVLLLNLSNQTSVQAKLAITFVKVPYERKKLREEYHLTAQSQNIHSQTMLLNGNILSVNKDGDIPPLKPLYVDPSKPIVIGPLSVVFAHIPNAIIPACT 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1350 520 PANTHER HEPARANASE-LIKE PROTEIN 3 6 440 - -
Lal19g1350 520 PANTHER HEPARANASE-LIKE PROTEIN 3 449 519 - -
Lal19g1350 520 Pfam Glycosyl hydrolase family 79, N-terminal domain 35 349 IPR005199 GO:0016020|GO:0016798
Lal19g1350 520 Gene3D Glycosidases 71 391 - -
Lal19g1350 520 PANTHER HEPARANASE-RELATED 6 440 - -
Lal19g1350 520 PANTHER HEPARANASE-RELATED 449 519 - -
Lal19g1350 520 SUPERFAMILY (Trans)glycosidases 48 393 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1350 Lal-Chr19 16356498 16360020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1350 14 520 Glycoside Hydrolase AT5G61250 46.067 3.07e-176 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1350 K07964 - gmx:100778008 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1350 19 16356498 16360020 Lal19g1350 19 16356498 16360020 ECH
Lal7g1217 7 17828259 17831721 Lal19g1350 19 16356498 16360020 LSH
Lal19g1350 19 16356498 16360020 Lal17g1396 17 15366281 15371004 PCT
Lal19g1350 19 16356498 16360020 Lal21g1144 21 14076455 14083594 PCT
Lal17g1396 17 15366281 15371004 Lal19g1350 19 16356498 16360020 PCT
Lal21g1144 21 14076455 14083594 Lal19g1350 19 16356498 16360020 PCT