Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1396 ATGGGTTCAAAGATTAAGCTTCTGGGTATGTGCATATGGCTATTTTATTTGGAAAGTTTCACCTTCATTGTTGTGAATACACAGGGTAATGAAAGTGGAAGAGGTGCAACTGTGAAGGGTAGTGTTGTAATTAATGGGAGATCTGTGATTGGAAATATTGATGATGATTTTGTTTGTGCAACTCTTGATTGGTGGCCACCTCAGAAATGTGACTATGGGAGATGCAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGACCTGAACAACAAGATTTTGTTGAATGCAGTGAAAGCCTTTTCACCTTTGAAACTTAGATTAGGTGGAAGTTTACAAGACAAGGTCATATATGAGACAGAAGATGATCAACAACCATGTACTCCTTTTCATGCTGACACTTCTCAAATGTTTGGTTTTACACAAGGGTGCCTCCCATTGAAGAGATGGGATGAGCTAAACAACTTTTTTGAAAAAGCAGGGGCTAAGATTGTCTTTGGATTAAACGCTCTTGCCGGAAAAACTATATCTGGCTCTGCAGTTGGACCTTGGAACTACACCAATGCTGAGTCTTTTATTCGTTACACCGTCTCAAAGAACTATGCCATTTATGGATGGGAACTTGGCAATGAATTGAGCGGGAGTGGAGTTGGAACGAGTATTTCAGCAGACCAATATGCTTCCGATCTAGCTGCTTTACGAAACATAGTTTACAATGCATATGAAGAGGTTGATCCTAAACCACTAATCATTGCACCTGGAGGTTTTTTCTCTGCTGATTGGTTCAAGGAGTTTATAAGCAAGTCTGGAACATATTTGGATGTGGCCTCCCACCACATTTATAACCTTGGACCAGGAGTTGATGAGCACCTTGTGGAAAAAATTCTTAATCCTTCCTATCTTGATGGAGTGGCAAGCACATTTAGAGACCTCAAAAATGTACTTGAAAGTTCAGGAACCGCAGCAACTGCATGGGTTGGTGAGTCAGGAGGGGCTTACAATAGCGGCCATCATCTTGTATCGGATGCATTTGTGTACAGTTTCTGGTTAGTGGTAACTCCATTCGATGAATATGCTGTAGTGTATTTGGATCAGCTTGGCATGTCAGCTGCATATGATACTAAAACATATTGCAGACAAAGTTTGATTGGAGGAAATTATTGTTTACTTAATACCACTAATTTCATGCCAAATCCAGACTACTATAGTGCTCTTCTTTGGCATAGACTCATGGGAAGACATGTGCTCTCAACTACATTCTCTGGGACAAAGAAGATAAGAGCTTATGCACACTGTTCAAAGCAATCTAAAGGAATCACAATACTATTGATCAACCTGGACAGCAGCACAACCGTTGAAGCCGATGTGACCTTGAGCGGCACGAAGAATTTCATGCATAGAAAAATGTCTGATAATTCAAAAGTAGTGAAGCTACCTTTGCATTATGTAACAGAAACAGCAAGAAAAGAGTACCATTTAACTCCACATGATGGGAATATACATAGCCAAATCATGTTATTAAATGGAATCACTCTAACAGTAAACTCAGATGGGGAAATTCCTTCTTTAGAGCCTACATATGTAAACTCATCAAACCCAATAATTGTTGCTCCTTACTCCATTGTATTTGCTCATATACCAGATGCTGTAGTTAAAGCTTGCATATAG 1662 0.3983 MGSKIKLLGMCIWLFYLESFTFIVVNTQGNESGRGATVKGSVVINGRSVIGNIDDDFVCATLDWWPPQKCDYGRCSWGLASLLNLDLNNKILLNAVKAFSPLKLRLGGSLQDKVIYETEDDQQPCTPFHADTSQMFGFTQGCLPLKRWDELNNFFEKAGAKIVFGLNALAGKTISGSAVGPWNYTNAESFIRYTVSKNYAIYGWELGNELSGSGVGTSISADQYASDLAALRNIVYNAYEEVDPKPLIIAPGGFFSADWFKEFISKSGTYLDVASHHIYNLGPGVDEHLVEKILNPSYLDGVASTFRDLKNVLESSGTAATAWVGESGGAYNSGHHLVSDAFVYSFWLVVTPFDEYAVVYLDQLGMSAAYDTKTYCRQSLIGGNYCLLNTTNFMPNPDYYSALLWHRLMGRHVLSTTFSGTKKIRAYAHCSKQSKGITILLINLDSSTTVEADVTLSGTKNFMHRKMSDNSKVVKLPLHYVTETARKEYHLTPHDGNIHSQIMLLNGITLTVNSDGEIPSLEPTYVNSSNPIIVAPYSIVFAHIPDAVVKACI 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1396 553 Pfam Glycosyl hydrolase family 79, N-terminal domain 40 348 IPR005199 GO:0016020|GO:0016798
Lal17g1396 553 PANTHER HEPARANASE-RELATED 5 552 - -
Lal17g1396 553 PANTHER HEPARANASE-LIKE PROTEIN 3 5 552 - -
Lal17g1396 553 Gene3D Glycosidases 76 407 - -
Lal17g1396 553 SUPERFAMILY (Trans)glycosidases 53 409 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1396 Lal-Chr17 15366281 15371004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1396 39 552 Glycoside Hydrolase AT5G61250 47.909 4.08e-178 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1396 K07964 - gmx:100802477 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1396 17 15366281 15371004 Lal17g1396 17 15366281 15371004 ECH
Lal17g1396 17 15366281 15371004 Lal21g1144 21 14076455 14083594 LSH
Lal7g1217 7 17828259 17831721 Lal17g1396 17 15366281 15371004 PCT
Lal19g1350 19 16356498 16360020 Lal17g1396 17 15366281 15371004 PCT
Lal17g1396 17 15366281 15371004 Lal7g1217 7 17828259 17831721 PCT
Lal17g1396 17 15366281 15371004 Lal19g1350 19 16356498 16360020 PCT