Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1019 ATGGGCGAGGAAGAGAAGAAACCAGTGGAAAATGGAGTGGAGGAGAAGAAAGAAGAGGAAGTTAAAGAGGAGAAGAACGAAGTAAAAGAGGAAGATAAGAAACCGGAAAAGGCGGCGGAGGAGGAGGAGAAAAAAGTGGAGGAATCAAAAGATGGGAATGAAACGAAAGATCAACCTGCGGCGCCACCAGAGATTGTGTTGAAAGTTTTTATGCATTGCGAAGGTTGTGCTCGAAAGGTTCGTCGTTCTCTGAAAGGGTTCCCAGGGGTTGAAGATGTAATAACAGATTGCAAGACTCACAAAGTGGTGGTTAAAGGTGAAAAAGCAGATCCACTCAAGATTCAAGAGAGAGTGCAAAGGAAGAGCCATAGACAAGTTGAGCTTCTTTCTCCAATCCCAGAGCCACCTACCGAGGAAGAGAAAAAACCTGAAGAGGAGAAGCCAAAGCCTGAAGAGACAAAAGAAGAGCCTCAAGTTATCACTGTTGTTCTGAATGTCCAGATGCATTGTGAAGCATGCTCCCAGGAAATCAAACGGCGCATTGAGAAAATGAATGGAGTTGAATCAGCTGAACCTGATCTGAAGAACTCACAAGTGAGTGTAAAGGGAGTGTTTGAGGCAGCAAAGTTGGTGGAATATGTGCACAAGAGGACTGGAAAACAAGCAGTGATAGTGAAACAAGAGGCAGAAAAGAAAGAGGAAGCAAAAGAAGAAGCCAAAGAGGAGAAGAAAGATGAGGAAGGTGGTGACAAAGATAAGAAGGGTGAAGTAGAAGAGGAGAAGAAGGAGAAGAAAGAAAGTGAAGTTGAAGGTGAAGGAGGAGAGGCTAATAAAGAAACTGAGGTAAGTGCAGAAGAAGAGACCAACAAGGTGGTGGAGCTGAAAAAGAATGAGTATTATTACAATCCACCAAGGTATGGAATGGAGTATTATCATGCTTATCCTGGACCAGATTACCCACCTCAGATTTTCAGTGATGAGAACCCCAATGCCTGCACTGTTATGTAA 1008 0.4365 MGEEEKKPVENGVEEKKEEEVKEEKNEVKEEDKKPEKAAEEEEKKVEESKDGNETKDQPAAPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDVITDCKTHKVVVKGEKADPLKIQERVQRKSHRQVELLSPIPEPPTEEEKKPEEEKPKPEETKEEPQVITVVLNVQMHCEACSQEIKRRIEKMNGVESAEPDLKNSQVSVKGVFEAAKLVEYVHKRTGKQAVIVKQEAEKKEEAKEEAKEEKKDEEGGDKDKKGEVEEEKKEKKESEVEGEGGEANKETEVSAEEETNKVVELKKNEYYYNPPRYGMEYYHAYPGPDYPPQIFSDENPNACTVM 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1019 335 MobiDBLite consensus disorder prediction 134 156 - -
Lal19g1019 335 MobiDBLite consensus disorder prediction 1 57 - -
Lal19g1019 335 Gene3D - 156 225 - -
Lal19g1019 335 CDD HMA 71 127 IPR006121 GO:0046872
Lal19g1019 335 SUPERFAMILY HMA, heavy metal-associated domain 157 227 IPR036163 GO:0046872
Lal19g1019 335 MobiDBLite consensus disorder prediction 228 290 - -
Lal19g1019 335 CDD HMA 163 222 IPR006121 GO:0046872
Lal19g1019 335 Coils Coil 222 249 - -
Lal19g1019 335 ProSiteProfiles Heavy-metal-associated domain profile. 168 201 IPR006121 GO:0046872
Lal19g1019 335 Pfam Heavy-metal-associated domain 164 220 IPR006121 GO:0046872
Lal19g1019 335 Pfam Heavy-metal-associated domain 67 121 IPR006121 GO:0046872
Lal19g1019 335 MobiDBLite consensus disorder prediction 1 63 - -
Lal19g1019 335 MobiDBLite consensus disorder prediction 117 157 - -
Lal19g1019 335 ProSiteProfiles Heavy-metal-associated domain profile. 71 127 IPR006121 GO:0046872
Lal19g1019 335 Coils Coil 277 297 - -
Lal19g1019 335 Coils Coil 11 34 - -
Lal19g1019 335 Gene3D - 61 134 - -
Lal19g1019 335 SUPERFAMILY HMA, heavy metal-associated domain 66 121 IPR036163 GO:0046872
Lal19g1019 335 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 335 IPR044577 GO:0046872
Lal19g1019 335 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3-LIKE 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1019 Lal-Chr19 14045113 14047087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1019 - - lang:109362245 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1019 19 14045113 14047087 Lal7g0873 7 15281041 15282927 ECH
Lal19g1019 19 14045113 14047087 Lal19g1019 19 14045113 14047087 ECH
Lal14g1448 14 15621522 15623583 Lal19g1019 19 14045113 14047087 LSH
Lal7g0873 7 15281041 15282927 Lal19g1019 19 14045113 14047087 LSH
Lal19g1019 19 14045113 14047087 Lal4g0706 4 5730212 5732857 PCT
Lal4g0706 4 5730212 5732857 Lal19g1019 19 14045113 14047087 PCT